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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0417800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 62.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.27 (0.12) R2 : 0.516
β1 : -5.51 (0.505) R2dD : 0.318 R2D : -0.21
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.46 (0.364) R2dE : 0.182 R2E : 0.203
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.5 (1.49) R2dD*E : 0.227 R2D*E : 0.149
γ1 : 0.928 (0.236) R2dN8 : 0.0364 R2N8 : 0.107
σ : 1.67
deviance : 1292.5
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.93
memory length : 5972
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.3
open length of G : 1.57

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1302.43 1.7 6.29 -5.79 0.424 3.09 0.846 -11.4 0.86 10.5 24.91 5786 10.1 1.94
1452.74 1.78 5.79 -4.37 0.118 5.65 -1.07 -- 1.12 11.1 23.89 5905 9.59 3.72
1296.32 1.68 6.27 -5.46 0.418 3.23 -- -12.4 0.872 9.75 24.92 5870 10.1 1.63
1403.42 1.74 5.78 -4.02 0.0813 5.9 -- -- 1.3 11.1 23.99 4457 9.4 4.2
1292.5 1.67 6.27 -5.51 -- 3.46 -- -12.5 0.928 -- 24.93 5972 10.3 1.57
1942.93 2.07 5.35 -0.028 0.387 -- 0.605 -- 2.98 10.5 -- -- -- --
1943.93 2.06 5.35 -8.34e-05 0.39 -- -- -- 2.98 11.5 -- -- -- --
1395.36 1.74 5.78 -4.08 -- 6 -- -- 1.34 -- 23.99 4463 9.63 3.32
1590.54 1.86 5.52 -- 0.403 3.5 -- -- 2.25 10.4 24.16 4364 11.3 4.04
1953.47 2.07 5.36 -0.0104 -- -- -- -- 2.98 -- -- -- -- --
1943.93 2.06 5.35 -- 0.39 -- -- -- 2.98 11.5 -- -- -- --
1589.36 1.86 5.52 -- -- 3.5 -- -- 2.25 -- 24.15 4365 11.3 5.3
1953.47 2.06 5.36 -- -- -- -- -- 2.98 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1234.06 radiation 10 43200 < th dose independent rect. 7 10
2 1234.25 radiation 10 43200 < th dose independent rect. 12 3
4 1234.55 radiation 1 43200 < th dose dependent rect. 23 6
7 1235.40 radiation 1 43200 < th dose dependent rect. 19 10
11 1235.72 radiation 10 43200 < th dose independent rect. 10 7
18 1236.99 radiation 10 43200 < th dose independent rect. 14 1
39 1239.48 radiation 1 43200 < th dose dependent rect. 4 1
56 1241.99 radiation 10 43200 < th dose independent rect. 2 14
57 1241.99 radiation 10 43200 < th dose independent rect. 21 19
74 1242.51 radiation 1 43200 < th dose dependent rect. 13 1
87 1242.66 radiation 1 43200 > th dose independent rect. 13 1
108 1243.20 radiation 10 43200 < th dose independent rect. 7 21
110 1243.21 radiation 10 43200 < th dose independent rect. 7 15
136 1243.84 radiation 10 43200 < th dose independent sin 0 NA
162 1244.23 radiation 10 43200 > th dose dependent rect. 13 1
509 1254.54 radiation 20 43200 < th dose independent rect. 2 21
512 1254.55 radiation 20 43200 < th dose independent no NA NA
647 1256.20 radiation 10 43200 < th dose independent rect. 13 23
723 1258.15 radiation 40 43200 < th dose dependent rect. 5 9
724 1258.16 radiation 40 43200 < th dose dependent rect. 2 12
726 1258.17 radiation 40 43200 < th dose dependent rect. 21 17
768 1258.70 radiation 20 43200 < th dose dependent rect. 7 2
792 1259.25 radiation 40 43200 < th dose dependent rect. 13 1
913 1261.14 radiation 30 43200 < th dose dependent rect. 5 6
920 1261.21 radiation 30 43200 < th dose dependent rect. 2 9
939 1261.33 radiation 30 43200 < th dose dependent sin 7 NA
952 1261.63 radiation 40 43200 > th dose independent rect. 11 3
973 1262.01 radiation 10 43200 > th dose dependent sin 4 NA