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Os09g0417600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 76.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.38 (0.0999) R2 : 0.352
β1 : 3.02 (0.39) R2dD : 0.0786 R2D : -0.24
β2 : 1.39 (0.227) R2dC : 0.0415 R2C : -0.0888
β3 : 2.16 (0.38) R2dE : 0.111 R2E : -0.27
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -15 (1.59) R2dD*E : 0.212 R2D*E : -0.229
γ1 : 3.78 (0.261) R2dN8 : 0.616 R2N8 : 0.0593
σ : 1.78
deviance : 1465.26
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C
peak time of C : 11.2
E
wheather : radiation
threshold : 30.04
memory length : 23060
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.6
open length of G : 2.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1465.98 1.8 7.45 3.19 1.2 2.48 -0.673 -15.8 3.51 11.8 10 15691 6 2
1749.41 1.96 7.67 0.932 0.519 0.908 -1.08 -- 2.33 13 82.03 47520 8.01 4.1
1465.26 1.78 7.38 3.02 1.39 2.16 -- -15 3.78 11.2 30.04 23060 11.6 2.8
1742.14 1.96 7.67 0.906 0.403 1.09 -- -- 2.39 15.1 141.4 47520 7.59 5.23
1544.93 1.83 7.39 2.94 -- 2.63 -- -15 3.85 -- 30 23064 11.6 2.83
1783.11 1.98 7.68 0.903 1.24 -- -0.913 -- 2.22 12 -- -- -- --
1786.72 1.98 7.68 0.866 1.24 -- -- -- 2.22 11.9 -- -- -- --
1750.15 1.96 7.66 0.896 -- 1.21 -- -- 2.39 -- 141.4 47520 7.59 5.23
1763.78 1.97 7.69 -- 0.395 1.07 -- -- 2.28 14.9 141.4 47520 7.59 5.23
1883.36 2.03 7.71 0.829 -- -- -- -- 2.2 -- -- -- -- --
1806.49 1.99 7.7 -- 1.23 -- -- -- 2.12 11.9 -- -- -- --
1771.3 1.97 7.69 -- -- 1.2 -- -- 2.29 -- 141.4 47520 7.59 5.23
1901.47 2.04 7.73 -- -- -- -- -- 2.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1398.38 atmosphere 1010 14400 > th dose independent rect. 5 5
4 1400.52 atmosphere 1010 14400 > th dose independent rect. 9 1
6 1400.75 atmosphere 1010 14400 < th dose independent rect. 5 5
9 1401.43 atmosphere 1010 14400 > th dose independent rect. 6 2
11 1402.17 atmosphere 1010 14400 < th dose independent rect. 9 1
12 1402.19 atmosphere 1010 14400 < th dose independent rect. 6 1
94 1411.05 atmosphere 1010 14400 < th dose independent sin 5 NA
120 1412.43 atmosphere 1010 14400 > th dose independent sin 5 NA
205 1416.11 atmosphere 1005 14400 > th dose dependent rect. 24 1
412 1422.04 atmosphere 1010 14400 < th dose independent rect. 24 23
417 1422.09 atmosphere 1010 14400 < th dose independent no NA NA
458 1422.99 atmosphere 1010 14400 < th dose independent rect. 8 23
462 1423.05 atmosphere 1005 14400 > th dose dependent rect. 3 2
550 1424.47 atmosphere 1010 14400 > th dose independent rect. 3 1
552 1424.49 atmosphere 1010 14400 > th dose independent no NA NA
600 1425.60 atmosphere 1010 14400 < th dose independent rect. 21 4
799 1431.05 atmosphere 1005 14400 > th dose dependent sin 8 NA
858 1432.60 radiation 20 43200 < th dose independent rect. 10 2
900 1433.73 atmosphere 1010 14400 > th dose independent rect. 21 2
905 1433.85 atmosphere 1010 14400 > th dose independent rect. 21 4
911 1434.08 radiation 10 43200 < th dose independent rect. 9 5
930 1434.51 radiation 20 14400 < th dose independent rect. 8 1