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Os09g0417500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.9 (0.0293) R2 : 0.717
β1 : 1.4 (0.107) R2dD : 0.109 R2D : 0.0674
β2 : 2.3 (0.0751) R2dC : 0.586 R2C : 0.553
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.638 (0.0625) R2dN8 : 0.0867 R2N8 : 0.0242
σ : 0.551
deviance : 138.27
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.59 0.524 5.92 1.35 2.18 0.699 1.22 -0.134 0.566 20.3 21.21 297 -- --
124.63 0.52 5.92 1.35 2.18 0.699 1.23 -- 0.568 20.3 21.22 297 -- --
129.17 0.529 5.91 1.35 2.18 0.705 -- -0.117 0.569 20.3 22.06 309 -- --
129.28 0.53 5.91 1.35 2.18 0.693 -- -- 0.571 20.3 22.06 310 -- --
185.04 0.634 5.85 0.631 -- 2.93 -- -0.549 0.408 -- 1.26 905 -- --
133.71 0.542 5.9 1.43 2.3 -- 1.27 -- 0.636 19.6 -- -- -- --
138.27 0.551 5.9 1.4 2.3 -- -- -- 0.638 19.6 -- -- -- --
172.79 0.612 5.87 1.18 -- 3.07 -- -- 0.498 -- 1.36 906 -- --
173.83 0.614 5.95 -- 2.02 1.01 -- -- 0.39 20.4 30.03 401 -- --
422.71 0.961 5.85 1.37 -- -- -- -- 0.604 -- -- -- -- --
189.72 0.644 5.94 -- 2.29 -- -- -- 0.483 19.7 -- -- -- --
209.43 0.674 5.9 -- -- 3.08 -- -- 0.387 -- 1 925 -- --
471.86 1.01 5.88 -- -- -- -- -- 0.452 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.44 atmosphere 995.0 270 > th dose dependent rect. 22 6
2 114.73 temperature 10.0 270 > th dose dependent rect. 8 9
3 114.88 atmosphere 995.0 270 > th dose dependent rect. 23 4
10 115.99 radiation 30.0 270 < th dose independent rect. 18 15
15 116.26 temperature 30.0 90 < th dose independent rect. 6 17
16 116.28 radiation 40.0 270 < th dose independent rect. 3 20
17 116.36 temperature 30.0 270 < th dose independent rect. 3 19
20 116.53 wind 7.0 270 < th dose independent rect. 9 9
24 116.63 radiation 40.0 270 < th dose independent rect. 3 8
25 116.66 radiation 40.0 270 < th dose dependent rect. 3 20
27 116.70 temperature 30.0 90 < th dose independent rect. 5 20
28 116.72 radiation 40.0 270 < th dose independent rect. 4 18
42 117.15 radiation 1.0 90 < th dose independent rect. 23 17
44 117.19 atmosphere 1000.0 270 > th dose independent rect. 22 6
47 117.27 atmosphere 1000.0 270 > th dose independent rect. 23 4
49 117.30 wind 7.0 270 < th dose independent rect. 23 16
51 117.39 radiation 1.0 90 < th dose independent rect. 23 11
56 117.44 radiation 1.0 90 < th dose independent rect. 23 14
62 117.50 radiation 1.0 90 < th dose independent sin 6 NA
64 117.52 radiation 1.0 90 > th dose independent sin 6 NA
67 117.55 temperature 30.0 270 < th dose independent rect. 17 16
71 117.63 radiation 1.0 90 < th dose dependent sin 5 NA
74 117.64 radiation 1.0 90 < th dose dependent rect. 23 17
75 117.65 temperature 15.0 270 > th dose independent rect. 18 15
77 117.67 radiation 40.0 270 < th dose independent rect. 3 10
80 117.73 radiation 30.0 270 < th dose independent rect. 4 6
91 117.84 temperature 15.0 270 > th dose independent rect. 9 9
92 117.86 temperature 15.0 270 > th dose independent rect. 15 8
108 118.10 radiation 40.0 270 < th dose dependent rect. 17 16
111 118.12 temperature 10.0 270 > th dose dependent rect. 23 17
114 118.16 radiation 1.0 90 < th dose dependent rect. 23 11
120 118.19 precipitation 0.1 270 < th dose independent rect. 18 15
122 118.19 precipitation 0.1 270 < th dose dependent rect. 18 15
124 118.21 radiation 1.0 90 < th dose dependent rect. 23 14
127 118.22 humidity 50.0 270 > th dose dependent rect. 22 6
132 118.26 humidity 90.0 30 < th dose independent rect. 19 14
141 118.34 humidity 90.0 270 < th dose independent rect. 9 8
146 118.37 humidity 60.0 30 > th dose independent rect. 6 19
149 118.38 humidity 50.0 270 > th dose independent rect. 15 8
154 118.42 precipitation 0.1 270 < th dose independent rect. 3 20
155 118.42 precipitation 0.1 270 < th dose dependent rect. 3 20
156 118.43 temperature 30.0 270 < th dose independent rect. 3 8
175 118.58 humidity 50.0 270 > th dose dependent rect. 23 4
183 118.62 radiation 1.0 90 < th dose independent rect. 1 15
185 118.62 radiation 1.0 90 < th dose dependent rect. 1 15
186 118.63 humidity 60.0 270 > th dose independent rect. 17 16
188 118.64 temperature 30.0 270 < th dose independent rect. 15 8
198 118.71 atmosphere 1015.0 270 < th dose independent rect. 4 18
226 118.88 radiation 40.0 270 < th dose dependent rect. 4 7
233 118.94 atmosphere 1010.0 270 < th dose independent rect. 16 7
239 118.98 temperature 15.0 10 > th dose dependent rect. 10 10
246 119.02 atmosphere 1015.0 270 < th dose independent rect. 3 20
256 119.06 humidity 80.0 270 > th dose independent rect. 23 4
257 119.06 radiation 1.0 90 < th dose independent rect. 1 9
262 119.08 radiation 1.0 90 < th dose independent rect. 1 12
272 119.10 atmosphere 1005.0 90 > th dose dependent rect. 1 4
277 119.12 precipitation 0.1 270 < th dose independent rect. 4 18
280 119.12 precipitation 0.1 270 < th dose dependent rect. 4 18
281 119.13 humidity 80.0 270 > th dose independent rect. 22 6
293 119.22 wind 9.0 270 < th dose independent rect. 22 6
295 119.23 temperature 10.0 270 > th dose independent rect. 22 6
296 119.23 temperature 30.0 270 < th dose independent rect. 22 6
297 119.23 humidity 50.0 270 > th dose independent rect. 22 6
307 119.23 temperature 10.0 270 > th dose independent rect. 4 18
308 119.23 radiation 1.0 270 < th dose dependent rect. 22 6
317 119.25 radiation 1.0 90 < th dose dependent rect. 1 9
323 119.28 radiation 1.0 90 < th dose dependent rect. 1 7
325 119.28 radiation 1.0 90 < th dose dependent rect. 1 12
341 119.35 precipitation 0.1 270 < th dose independent rect. 3 8
342 119.35 humidity 60.0 90 > th dose independent rect. 6 17
343 119.35 precipitation 0.1 270 < th dose dependent rect. 3 8
352 119.39 wind 9.0 270 < th dose independent rect. 23 4
353 119.39 temperature 10.0 270 > th dose independent rect. 23 4
354 119.39 temperature 30.0 270 < th dose independent rect. 23 4
355 119.39 humidity 50.0 270 > th dose independent rect. 23 4
360 119.39 radiation 1.0 270 < th dose independent rect. 23 4
365 119.39 radiation 30.0 270 < th dose independent rect. 15 8
367 119.39 temperature 10.0 270 > th dose independent rect. 3 20
368 119.39 radiation 1.0 270 < th dose dependent rect. 23 4
412 119.54 temperature 15.0 270 > th dose independent rect. 23 16
414 119.55 precipitation 0.1 270 < th dose independent rect. 23 4
416 119.55 precipitation 0.1 270 < th dose dependent rect. 23 4
418 119.55 radiation 40.0 270 < th dose dependent rect. 15 8
429 119.57 humidity 70.0 270 > th dose independent rect. 3 20
437 119.62 wind 7.0 270 < th dose independent rect. 11 16
445 119.64 precipitation 0.1 270 < th dose independent rect. 9 9
447 119.64 precipitation 0.1 270 < th dose dependent rect. 9 9
453 119.68 wind 9.0 270 < th dose dependent rect. 23 4
467 119.78 atmosphere 995.0 270 > th dose independent rect. 18 15
485 119.81 atmosphere 1015.0 270 < th dose independent rect. 9 9
499 119.85 atmosphere 995.0 270 > th dose independent rect. 4 18
506 119.87 wind 9.0 270 < th dose independent rect. 18 15
526 119.93 temperature 10.0 270 > th dose dependent rect. 9 18
530 119.94 wind 9.0 270 < th dose dependent rect. 9 9
538 119.97 humidity 90.0 720 > th dose dependent rect. 19 6
550 120.02 atmosphere 1010.0 270 < th dose independent rect. 17 5
583 120.10 humidity 90.0 720 > th dose dependent rect. 12 13
585 120.11 atmosphere 995.0 30 > th dose dependent rect. 1 5
586 120.11 wind 9.0 270 < th dose dependent rect. 22 6
601 120.15 humidity 90.0 720 < th dose independent rect. 20 4
611 120.16 precipitation 0.1 270 < th dose independent rect. 15 8
613 120.16 precipitation 0.1 270 < th dose dependent rect. 15 8
622 120.18 atmosphere 995.0 270 > th dose independent rect. 3 20
631 120.22 atmosphere 995.0 270 > th dose independent rect. 15 8
634 120.22 atmosphere 1005.0 270 > th dose dependent rect. 1 1
643 120.23 atmosphere 995.0 270 > th dose independent rect. 23 16
661 120.26 wind 9.0 270 < th dose dependent rect. 23 16
672 120.30 wind 9.0 270 < th dose independent rect. 4 18
732 120.43 atmosphere 1015.0 270 < th dose independent rect. 23 4
733 120.43 wind 1.0 90 > th dose independent rect. 1 5
773 120.48 precipitation 0.1 270 < th dose independent rect. 22 6
777 120.48 precipitation 0.1 270 < th dose dependent rect. 22 6
781 120.49 wind 7.0 270 < th dose independent rect. 9 19
792 120.53 temperature 25.0 270 > th dose dependent rect. 2 1
796 120.55 humidity 90.0 30 < th dose independent sin 9 NA
799 120.55 wind 9.0 270 < th dose independent rect. 3 20
831 120.63 atmosphere 1000.0 30 > th dose independent rect. 1 5
846 120.66 humidity 50.0 270 > th dose independent rect. 23 16
909 120.71 atmosphere 1005.0 10 > th dose dependent rect. 2 3
916 120.73 wind 1.0 270 > th dose independent rect. 9 9
927 120.75 wind 9.0 270 < th dose independent rect. 15 8
940 120.77 humidity 90.0 10 < th dose dependent rect. 20 13
950 120.79 temperature 25.0 270 > th dose independent rect. 2 1
963 120.82 radiation 1.0 90 > th dose independent rect. 4 7
977 120.83 atmosphere 1015.0 270 < th dose independent rect. 23 16
986 120.84 radiation 10.0 10 < th dose dependent rect. 1 5