Os09g0416400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0416400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.74 | 0.335 | 9.29 | -1.03 | 0.781 | -0.78 | 0.718 | -0.628 | 0.0223 | 1.44 | 24.71 | 29 | -- | -- |
| 51.25 | 0.333 | 9.31 | -1.13 | 0.775 | -0.727 | 0.513 | -- | 0.0033 | 1.42 | 24.8 | 31 | -- | -- |
| 52.3 | 0.339 | 9.3 | -1.14 | 0.77 | -0.721 | -- | -0.0496 | 0.00594 | 1.35 | 24.62 | 26 | -- | -- |
| 52.3 | 0.337 | 9.31 | -1.15 | 0.77 | -0.724 | -- | -- | 0.00204 | 1.39 | 24.7 | 26 | -- | -- |
| 76.36 | 0.407 | 9.27 | -0.952 | -- | -0.706 | -- | -0.975 | 0.0474 | -- | 27.7 | 986 | -- | -- |
| 58.85 | 0.36 | 9.27 | -0.959 | 0.637 | -- | 0.508 | -- | 0.139 | 1.44 | -- | -- | -- | -- |
| 59.9 | 0.362 | 9.27 | -0.976 | 0.636 | -- | -- | -- | 0.136 | 1.4 | -- | -- | -- | -- |
| 77.05 | 0.409 | 9.3 | -1.16 | -- | -0.692 | -- | -- | 0.000949 | -- | 29.36 | 988 | -- | -- |
| 83.72 | 0.428 | 9.26 | -- | 0.671 | -0.283 | -- | -- | 0.2 | 1.32 | 24.64 | 31 | -- | -- |
| 84.81 | 0.43 | 9.26 | -0.951 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 85.01 | 0.431 | 9.25 | -- | 0.619 | -- | -- | -- | 0.245 | 1.34 | -- | -- | -- | -- |
| 102.28 | 0.471 | 9.22 | -- | -- | 0.649 | -- | -- | 0.329 | -- | 37.49 | 11 | -- | -- |
| 108.67 | 0.487 | 9.24 | -- | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 9 |
| 4 | 45.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 6 | 45.73 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 8 | 45.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 13 | 46.19 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 25 | 46.86 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 18 |
| 29 | 46.99 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 14 |
| 31 | 47.03 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 32 | 47.06 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 12 |
| 41 | 47.19 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 9 |
| 47 | 47.37 | wind | 5 | 90 | < th | dose independent | rect. | 9 | 20 |
| 66 | 47.74 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 80 | 47.91 | wind | 5 | 90 | < th | dose independent | rect. | 11 | 18 |
| 82 | 47.94 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 11 |
| 85 | 47.98 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 91 | 48.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 99 | 48.15 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 18 |
| 180 | 48.79 | wind | 9 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 181 | 48.80 | radiation | 10 | 720 | < th | dose independent | rect. | 17 | 10 |
| 184 | 48.82 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 186 | 48.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 201 | 48.89 | temperature | 25 | 270 | < th | dose independent | sin | 13 | NA |
| 211 | 48.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 251 | 49.28 | wind | 3 | 720 | < th | dose independent | rect. | 2 | 1 |
| 254 | 49.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 266 | 49.34 | wind | 3 | 720 | < th | dose independent | rect. | 24 | 4 |
| 297 | 49.48 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 348 | 49.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 349 | 49.67 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 359 | 49.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 3 |
| 373 | 49.77 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 22 |
| 395 | 49.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 399 | 49.83 | temperature | 25 | 30 | < th | dose dependent | sin | 14 | NA |
| 405 | 49.84 | wind | 5 | 720 | < th | dose independent | rect. | 17 | 2 |
| 410 | 49.84 | wind | 7 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 523 | 50.10 | atmosphere | 1015 | 90 | < th | dose independent | rect. | 9 | 20 |
| 534 | 50.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 535 | 50.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 580 | 50.20 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 16 |
| 641 | 50.32 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 1 |
| 664 | 50.37 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 675 | 50.39 | wind | 5 | 90 | < th | dose independent | rect. | 9 | 10 |
| 734 | 50.51 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 776 | 50.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 797 | 50.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 836 | 50.65 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 841 | 50.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 21 |
| 845 | 50.67 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 14 |
| 853 | 50.68 | radiation | 10 | 720 | < th | dose independent | rect. | 17 | 2 |
| 860 | 50.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 870 | 50.71 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 5 |
| 883 | 50.71 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 922 | 50.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 933 | 50.77 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 936 | 50.78 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 947 | 50.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 951 | 50.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 962 | 50.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 977 | 50.84 | wind | 9 | 720 | < th | dose dependent | rect. | 24 | 4 |
| 983 | 50.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |