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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0415200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0391) R2 : 0.124
β1 : 0.134 (0.143) R2dD : 0.00199 R2D : 0.00141
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.15 (0.972) R2dE : 0.0557 R2E : -0.135
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 28.4 (4.07) R2dD*E : 0.255 R2D*E : 0.0667
γ1 : -0.0585 (0.0831) R2dN8 : 0.0013 R2N8 : -0.000237
σ : 0.727
deviance : 243.94
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.7184
memory length : 98
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.01
open length of G : 2.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.53 0.733 2.8 0.131 0.0951 -2.94 -0.25 27.6 -0.0669 3.17 0.7726 98 5.95 2.45
275.71 0.779 2.82 0.112 0.0871 -0.293 0.678 -- -0.0628 7.25 0.5002 12 4.24 0.856
243.62 0.727 2.8 0.132 0.0991 -3.11 -- 28.3 -0.0694 2.6 0.7301 98 5.95 2.43
272.53 0.769 2.84 0.0748 0.312 -0.598 -- -- -0.0972 5.27 3.775 142 3.38 0.483
243.94 0.727 2.79 0.134 -- -3.15 -- 28.4 -0.0585 -- 0.7184 98 6.01 2.38
276.04 0.779 2.82 0.108 0.0748 -- 0.666 -- -0.0599 7.45 -- -- -- --
276.88 0.779 2.83 0.12 0.113 -- -- -- -0.0628 4.51 -- -- -- --
275.69 0.773 2.83 0.143 -- -0.378 -- -- -0.0712 -- 3.3 138 3.33 0.503
272.65 0.769 2.84 -- 0.305 -0.631 -- -- -0.102 4.74 3.366 139 3.52 0.383
277.57 0.778 2.83 0.124 -- -- -- -- -0.0598 -- -- -- -- --
277.26 0.779 2.83 -- 0.115 -- -- -- -0.0761 4.49 -- -- -- --
276.17 0.774 2.83 -- -- -0.295 -- -- -0.0838 -- 4.356 131 3.48 0.367
277.97 0.778 2.83 -- -- -- -- -- -0.0736 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.81 wind 1.0 90 < th dose independent rect. 6 1
2 247.71 wind 1.0 90 < th dose dependent rect. 6 2
3 247.82 temperature 25.0 90 < th dose dependent rect. 6 4
6 248.53 temperature 25.0 10 < th dose independent rect. 6 4
7 248.62 wind 1.0 10 < th dose independent rect. 8 1
9 248.62 wind 1.0 10 < th dose dependent rect. 8 1
13 249.13 wind 1.0 90 < th dose independent rect. 6 3
17 250.05 temperature 20.0 270 < th dose independent rect. 4 11
20 250.07 temperature 20.0 270 < th dose independent rect. 4 8
26 250.22 temperature 20.0 270 < th dose independent rect. 4 5
38 252.31 temperature 25.0 270 < th dose dependent rect. 4 4
39 252.54 temperature 25.0 10 > th dose independent rect. 21 1
50 252.83 temperature 20.0 270 < th dose independent rect. 5 1
61 253.58 radiation 10.0 10 > th dose independent sin 11 NA
64 253.81 radiation 10.0 10 > th dose independent rect. 17 15
75 254.09 radiation 10.0 10 > th dose independent rect. 7 1
97 254.45 temperature 20.0 270 > th dose independent sin 2 NA
108 254.77 temperature 20.0 270 < th dose independent sin 1 NA
173 256.92 humidity 90.0 90 > th dose dependent rect. 6 1
177 256.99 radiation 10.0 10 < th dose independent sin 11 NA
192 257.51 atmosphere 1005.0 10 > th dose dependent rect. 7 1
199 257.92 humidity 70.0 10 > th dose independent rect. 6 4
200 257.93 atmosphere 995.0 90 > th dose independent rect. 9 21
202 257.96 atmosphere 995.0 90 > th dose independent rect. 8 23
205 258.08 temperature 20.0 270 > th dose independent rect. 1 12
206 258.14 wind 1.0 10 < th dose dependent rect. 1 2
211 258.26 atmosphere 995.0 10 > th dose independent rect. 8 23
216 258.42 atmosphere 1000.0 90 > th dose dependent rect. 6 3
232 258.78 temperature 15.0 4320 > th dose independent rect. 7 2
251 258.97 radiation 30.0 10 < th dose independent rect. 6 4
263 259.17 radiation 1.0 90 > th dose independent rect. 6 3
277 259.36 humidity 90.0 90 > th dose independent rect. 6 1
308 259.68 atmosphere 1000.0 90 > th dose independent rect. 6 3
384 260.37 atmosphere 1000.0 10 > th dose independent rect. 7 1
411 260.71 humidity 90.0 10 < th dose independent rect. 6 2
413 260.71 wind 3.0 30 < th dose dependent rect. 20 2
414 260.73 humidity 60.0 90 > th dose dependent rect. 6 3
420 260.78 temperature 20.0 30 > th dose independent rect. 7 1
423 260.82 humidity 90.0 720 < th dose dependent rect. 4 1
425 260.84 temperature 25.0 10 > th dose dependent rect. 21 1
439 260.98 radiation 10.0 10 > th dose independent rect. 14 19
447 261.02 temperature 20.0 270 < th dose dependent rect. 4 16
449 261.04 temperature 20.0 270 < th dose dependent rect. 4 13
451 261.06 atmosphere 1010.0 90 < th dose independent rect. 6 3
483 261.27 radiation 30.0 10 < th dose independent rect. 7 1
490 261.29 wind 1.0 270 < th dose independent rect. 4 1
493 261.30 humidity 70.0 10 > th dose independent rect. 7 1
494 261.30 wind 9.0 1440 < th dose independent rect. 7 3
509 261.41 wind 1.0 10 > th dose independent rect. 6 2
557 261.69 atmosphere 995.0 90 > th dose independent rect. 9 10
561 261.73 temperature 15.0 270 > th dose independent rect. 18 14
577 261.89 wind 1.0 270 < th dose dependent rect. 4 1
590 262.00 humidity 50.0 14400 > th dose independent rect. 8 1
594 262.05 precipitation 0.1 90 < th dose independent rect. 6 3
595 262.05 precipitation 0.1 90 < th dose dependent rect. 6 3
606 262.13 atmosphere 1010.0 10 < th dose independent rect. 6 2
616 262.21 wind 7.0 90 < th dose independent rect. 6 3
621 262.23 temperature 10.0 90 > th dose independent rect. 6 3
626 262.23 temperature 10.0 90 > th dose independent rect. 9 21
638 262.33 radiation 1.0 90 < th dose independent sin 9 NA
647 262.36 radiation 10.0 90 < th dose dependent sin 11 NA
655 262.44 humidity 80.0 720 > th dose independent rect. 1 4
668 262.50 precipitation 0.1 10 < th dose independent rect. 7 1
669 262.50 precipitation 0.1 10 < th dose dependent rect. 7 1
695 262.61 wind 9.0 90 < th dose independent rect. 9 21
723 262.74 radiation 40.0 90 < th dose dependent rect. 6 4
748 262.77 humidity 50.0 1440 > th dose independent rect. 7 2
752 262.77 atmosphere 995.0 1440 > th dose independent rect. 7 2
755 262.77 atmosphere 1015.0 1440 < th dose independent rect. 7 2
758 262.77 temperature 10.0 1440 > th dose independent rect. 9 22
812 262.87 temperature 15.0 720 > th dose independent rect. 20 6
820 262.91 humidity 80.0 720 < th dose independent rect. 4 3
833 262.93 temperature 15.0 720 > th dose independent rect. 11 6
864 262.98 wind 1.0 720 < th dose dependent rect. 21 1
868 262.99 wind 1.0 10 < th dose independent rect. 1 2
881 263.05 humidity 80.0 720 > th dose independent rect. 3 1
903 263.14 atmosphere 1005.0 90 > th dose dependent rect. 24 9
905 263.15 humidity 70.0 10 > th dose independent rect. 20 14
907 263.15 wind 1.0 90 < th dose dependent rect. 6 15
951 263.29 humidity 80.0 720 < th dose independent rect. 5 1
956 263.29 temperature 25.0 270 < th dose dependent sin 5 NA
967 263.30 humidity 90.0 10 < th dose independent rect. 2 7
978 263.33 temperature 15.0 1440 > th dose independent rect. 8 15
979 263.33 temperature 20.0 270 < th dose dependent sin 1 NA