Os09g0414300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to P-type R2R3 Myb protein (Fragment).
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Os09g0414300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to P-type R2R3 Myb protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.15 | 0.434 | 9.9 | -0.112 | 0.616 | -0.54 | 0.389 | 0.244 | 0.307 | 2.75 | 20.43 | 706 | -- | -- |
| 85.32 | 0.43 | 9.91 | -0.155 | 0.616 | -0.563 | 0.417 | -- | 0.298 | 2.72 | 20.4 | 705 | -- | -- |
| 85.66 | 0.431 | 9.9 | -0.103 | 0.617 | -0.537 | -- | 0.307 | 0.311 | 2.83 | 20.4 | 705 | -- | -- |
| 85.89 | 0.432 | 9.9 | -0.143 | 0.634 | -0.588 | -- | -- | 0.316 | 2.84 | 20.43 | 870 | -- | -- |
| 103.25 | 0.473 | 9.89 | -0.115 | -- | -0.577 | -- | 0.0601 | 0.323 | -- | 20.8 | 345 | -- | -- |
| 94.44 | 0.456 | 9.93 | -0.364 | 0.6 | -- | 0.454 | -- | 0.175 | 3.19 | -- | -- | -- | -- |
| 95.08 | 0.457 | 9.94 | -0.373 | 0.605 | -- | -- | -- | 0.172 | 3.33 | -- | -- | -- | -- |
| 103.05 | 0.473 | 9.9 | -0.161 | -- | -0.586 | -- | -- | 0.328 | -- | 20.8 | 285 | -- | -- |
| 86.39 | 0.433 | 9.9 | -- | 0.638 | -0.623 | -- | -- | 0.328 | 2.8 | 20.5 | 872 | -- | -- |
| 115.73 | 0.503 | 9.93 | -0.348 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 98.76 | 0.465 | 9.93 | -- | 0.598 | -- | -- | -- | 0.214 | 3.33 | -- | -- | -- | -- |
| 103.74 | 0.474 | 9.9 | -- | -- | -0.605 | -- | -- | 0.336 | -- | 20.7 | 285 | -- | -- |
| 118.92 | 0.509 | 9.93 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 2 | 81.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 10 | 82.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 15 | 82.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 16 | 82.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 22 | 82.98 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 29 | 83.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 34 | 83.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 41 | 83.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 44 | 83.39 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 19 |
| 53 | 83.51 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 60 | 83.65 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 68 | 83.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 84 | 83.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 92 | 83.93 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 93 | 83.93 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 94 | 83.95 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 96 | 83.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 109 | 84.02 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 129 | 84.14 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 139 | 84.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 144 | 84.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 156 | 84.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 168 | 84.33 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 173 | 84.36 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 174 | 84.36 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 18 |
| 181 | 84.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 219 | 84.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 223 | 84.51 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 229 | 84.52 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 247 | 84.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 248 | 84.58 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 288 | 84.64 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 323 | 84.75 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 335 | 84.77 | wind | 7 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 363 | 84.84 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 10 |
| 381 | 84.87 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 403 | 84.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 490 | 85.08 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 18 |
| 522 | 85.13 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 523 | 85.13 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 533 | 85.14 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 556 | 85.18 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 557 | 85.18 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 572 | 85.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 577 | 85.20 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 586 | 85.21 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 609 | 85.25 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 11 |
| 618 | 85.26 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 6 |
| 620 | 85.26 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 635 | 85.27 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 668 | 85.31 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 704 | 85.34 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 716 | 85.36 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 718 | 85.36 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 23 |
| 728 | 85.37 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 737 | 85.38 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 865 | 85.49 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 893 | 85.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 18 |
| 931 | 85.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |