Os09g0413300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os09g0413300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.02 | 0.538 | 5.76 | 2.21 | 2.32 | 1.82 | 0.49 | 0.578 | -0.143 | 20 | 25.1 | 29 | -- | -- |
| 131.62 | 0.534 | 5.76 | 2.31 | 2.32 | 1.8 | 0.551 | -- | -0.12 | 20 | 25.1 | 28 | -- | -- |
| 131.71 | 0.535 | 5.76 | 2.18 | 2.32 | 1.82 | -- | 0.678 | -0.145 | 20 | 25.1 | 28 | -- | -- |
| 132.56 | 0.536 | 5.75 | 2.28 | 2.32 | 1.76 | -- | -- | -0.125 | 20 | 25.1 | 29 | -- | -- |
| 411.32 | 0.95 | 5.71 | 2.2 | -- | 2.56 | -- | 1.29 | -0.192 | -- | 23.37 | 13 | -- | -- |
| 177.37 | 0.624 | 5.83 | 1.88 | 2.39 | -- | 0.535 | -- | -0.477 | 20.6 | -- | -- | -- | -- |
| 178.3 | 0.625 | 5.83 | 1.86 | 2.39 | -- | -- | -- | -0.477 | 20.6 | -- | -- | -- | -- |
| 413.36 | 0.951 | 5.69 | 2.36 | -- | 2.37 | -- | -- | -0.148 | -- | 23.69 | 7 | -- | -- |
| 256.61 | 0.75 | 5.84 | -- | 2.33 | 0.892 | -- | -- | -0.53 | 20.4 | 25.1 | 29 | -- | -- |
| 498.91 | 1.04 | 5.77 | 1.85 | -- | -- | -- | -- | -0.499 | -- | -- | -- | -- | -- |
| 269.7 | 0.768 | 5.88 | -- | 2.38 | -- | -- | -- | -0.684 | 20.6 | -- | -- | -- | -- |
| 548.8 | 1.09 | 5.78 | -- | -- | 1.63 | -- | -- | -0.52 | -- | 23.29 | 5 | -- | -- |
| 589.58 | 1.13 | 5.82 | -- | -- | -- | -- | -- | -0.704 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.60 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 3 | 130.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 11 | 131.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 12 | 131.03 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 131.05 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 16 | 131.06 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 17 | 131.06 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 18 | 131.07 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 20 | 131.08 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 22 | 131.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 29 | 131.20 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 33 | 131.32 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 35 | 131.44 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 342 | 137.38 | temperature | 15 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 347 | 137.41 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 373 | 137.77 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 466 | 138.95 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 23 |
| 475 | 139.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 539 | 139.73 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 561 | 139.94 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 576 | 140.07 | temperature | 20 | 30 | < th | dose independent | rect. | 22 | 22 |
| 646 | 140.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 670 | 140.80 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 688 | 140.87 | temperature | 20 | 30 | < th | dose independent | rect. | 11 | 23 |
| 689 | 140.87 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 23 |
| 692 | 140.88 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 694 | 140.89 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 695 | 140.89 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 696 | 140.89 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 699 | 140.90 | temperature | 20 | 30 | < th | dose independent | rect. | 13 | 23 |
| 700 | 140.90 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 701 | 140.90 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 733 | 141.12 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 751 | 141.18 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 857 | 141.70 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 886 | 141.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 988 | 142.45 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |