Os09g0412900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os09g0412900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.07 | 0.364 | 7.84 | 1.63 | 1.16 | 0.0795 | 0.476 | -2.94 | 0.369 | 19 | 26.12 | 1641 | -- | -- |
| 64.07 | 0.373 | 7.89 | 1.47 | 1.16 | 0.666 | 0.54 | -- | 0.335 | 19 | 13.74 | 15532 | -- | -- |
| 60.6 | 0.363 | 7.84 | 1.65 | 1.16 | 0.0924 | -- | -2.92 | 0.376 | 19 | 26.4 | 1718 | -- | -- |
| 64.44 | 0.374 | 7.89 | 1.44 | 1.16 | 0.617 | -- | -- | 0.319 | 19 | 13.72 | 15527 | -- | -- |
| 131.25 | 0.534 | 7.82 | 1.57 | -- | 0.0557 | -- | -2.9 | 0.336 | -- | 25.2 | 1598 | -- | -- |
| 70.08 | 0.392 | 7.92 | 0.972 | 1.16 | -- | 0.427 | -- | 0.179 | 19 | -- | -- | -- | -- |
| 70.55 | 0.393 | 7.92 | 0.964 | 1.16 | -- | -- | -- | 0.18 | 19 | -- | -- | -- | -- |
| 134.99 | 0.541 | 7.87 | 1.44 | -- | 0.743 | -- | -- | 0.325 | -- | 13.65 | 23010 | -- | -- |
| 79.84 | 0.416 | 7.99 | -- | 1.16 | -0.628 | -- | -- | -0.114 | 19 | 36.63 | 47520 | -- | -- |
| 141.49 | 0.556 | 7.9 | 0.94 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 95.03 | 0.456 | 7.95 | -- | 1.15 | -- | -- | -- | 0.0728 | 19.1 | -- | -- | -- | -- |
| 150.41 | 0.571 | 7.96 | -- | -- | -0.61 | -- | -- | -0.128 | -- | 44.69 | 47520 | -- | -- |
| 164.81 | 0.599 | 7.92 | -- | -- | -- | -- | -- | 0.0545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.28 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 2 | 58.39 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 4 | 58.41 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 7 | 58.60 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 9 | 58.77 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 10 | 58.91 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 18 | 59.11 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 33 | 59.23 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 51 | 59.40 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 55 | 59.42 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 65 | 59.47 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 69 | 59.48 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 95 | 59.59 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 102 | 59.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 104 | 59.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 112 | 59.62 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 114 | 59.62 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 116 | 59.62 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 2 |
| 122 | 59.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 126 | 59.64 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 137 | 59.67 | wind | 3 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 163 | 59.70 | wind | 3 | 43200 | < th | dose dependent | sin | 11 | NA |
| 181 | 59.72 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 199 | 59.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 201 | 59.76 | wind | 3 | 43200 | < th | dose independent | sin | 13 | NA |
| 202 | 59.76 | wind | 3 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 215 | 59.77 | wind | 3 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 218 | 59.78 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 227 | 59.79 | wind | 3 | 43200 | < th | dose independent | no | NA | NA |
| 256 | 59.81 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 279 | 59.84 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 23 |
| 292 | 59.85 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 333 | 59.88 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 360 | 59.91 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 366 | 59.92 | wind | 3 | 43200 | > th | dose independent | sin | 13 | NA |
| 381 | 59.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 384 | 59.92 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 385 | 59.93 | wind | 3 | 43200 | > th | dose independent | no | NA | NA |
| 389 | 59.93 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 396 | 59.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 403 | 59.94 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 412 | 59.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 434 | 59.96 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 459 | 59.97 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 462 | 59.98 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 468 | 59.98 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 469 | 59.98 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 472 | 59.98 | wind | 3 | 43200 | < th | dose dependent | no | NA | NA |
| 473 | 59.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 474 | 59.98 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 529 | 60.02 | wind | 3 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 539 | 60.02 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 565 | 60.04 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 606 | 60.06 | wind | 3 | 43200 | < th | dose dependent | sin | 2 | NA |
| 610 | 60.06 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 661 | 60.09 | wind | 3 | 43200 | < th | dose independent | sin | 1 | NA |
| 663 | 60.09 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 754 | 60.13 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 795 | 60.15 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 809 | 60.16 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 958 | 60.23 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 968 | 60.24 | wind | 3 | 43200 | > th | dose independent | sin | 1 | NA |
| 969 | 60.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 981 | 60.24 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 14 |