Os09g0412200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF246, plant family protein.
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Os09g0412200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF246, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.73 | 0.229 | 10.3 | -0.357 | 0.265 | -0.579 | -0.414 | 0.383 | 0.0994 | 9.15 | 0.53 | 97 | -- | -- |
| 24.08 | 0.229 | 10.3 | -0.378 | 0.256 | -0.575 | -0.0287 | -- | 0.102 | 9.27 | 0.5298 | 101 | -- | -- |
| 23.95 | 0.228 | 10.3 | -0.359 | 0.253 | -0.583 | -- | 0.165 | 0.103 | 9.39 | 0.53 | 105 | -- | -- |
| 24.07 | 0.229 | 10.3 | -0.373 | 0.258 | -0.588 | -- | -- | 0.0987 | 9.54 | 0.52 | 105 | -- | -- |
| 26.02 | 0.238 | 10.3 | -0.387 | -- | -0.478 | -- | 0.248 | 0.091 | -- | 0.52 | 157 | -- | -- |
| 28.78 | 0.252 | 10.4 | -0.416 | 0.547 | -- | -0.159 | -- | 0.0488 | 2.02 | -- | -- | -- | -- |
| 28.88 | 0.252 | 10.4 | -0.411 | 0.547 | -- | -- | -- | 0.0497 | 2 | -- | -- | -- | -- |
| 25.82 | 0.237 | 10.3 | -0.371 | -- | -0.481 | -- | -- | 0.0733 | -- | 0.529 | 157 | -- | -- |
| 27.87 | 0.246 | 10.3 | -- | 0.265 | -0.586 | -- | -- | 0.11 | 9.43 | 0.4535 | 105 | -- | -- |
| 46.85 | 0.32 | 10.4 | -0.389 | -- | -- | -- | -- | 0.0625 | -- | -- | -- | -- | -- |
| 33.34 | 0.27 | 10.4 | -- | 0.539 | -- | -- | -- | 0.0955 | 1.99 | -- | -- | -- | -- |
| 29.58 | 0.253 | 10.3 | -- | -- | -0.481 | -- | -- | 0.0995 | -- | 0.5299 | 170 | -- | -- |
| 50.83 | 0.333 | 10.3 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.86 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 22.96 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 13 |
| 4 | 23.08 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 6 | 23.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 14 | 23.30 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 5 |
| 21 | 23.37 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 23 | 23.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 27 | 23.41 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 30 | 23.45 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 32 | 23.48 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 34 | 23.49 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 40 | 23.50 | humidity | 50 | 720 | > th | dose independent | rect. | 9 | 19 |
| 41 | 23.50 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 9 |
| 49 | 23.51 | humidity | 60 | 720 | > th | dose independent | rect. | 9 | 11 |
| 56 | 23.54 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 57 | 23.55 | humidity | 60 | 720 | > th | dose independent | rect. | 8 | 13 |
| 72 | 23.59 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 9 |
| 74 | 23.60 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 9 |
| 80 | 23.60 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 84 | 23.61 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 17 |
| 85 | 23.61 | humidity | 70 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 174 | 23.72 | radiation | 1 | 90 | < th | dose independent | sin | 13 | NA |
| 178 | 23.73 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 183 | 23.74 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 20 |
| 187 | 23.74 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 190 | 23.75 | humidity | 80 | 720 | < th | dose dependent | sin | 17 | NA |
| 193 | 23.75 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 200 | 23.77 | radiation | 1 | 90 | > th | dose independent | sin | 13 | NA |
| 221 | 23.79 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 236 | 23.81 | humidity | 50 | 720 | > th | dose independent | rect. | 15 | 22 |
| 239 | 23.81 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 253 | 23.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 315 | 23.89 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 332 | 23.89 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 340 | 23.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 358 | 23.91 | radiation | 1 | 90 | < th | dose dependent | no | NA | NA |
| 366 | 23.91 | radiation | 1 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 369 | 23.92 | radiation | 1 | 90 | > th | dose independent | rect. | 15 | 16 |
| 371 | 23.92 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 20 |
| 411 | 23.94 | radiation | 1 | 90 | < th | dose dependent | sin | 13 | NA |
| 423 | 23.95 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 427 | 23.96 | humidity | 60 | 720 | > th | dose independent | sin | 16 | NA |
| 461 | 23.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 486 | 23.99 | humidity | 50 | 720 | > th | dose dependent | sin | 19 | NA |
| 496 | 24.00 | humidity | 60 | 720 | > th | dose independent | sin | 18 | NA |
| 520 | 24.01 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 11 |
| 593 | 24.04 | humidity | 50 | 720 | > th | dose independent | rect. | 24 | 23 |
| 596 | 24.04 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 700 | 24.06 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 708 | 24.07 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 22 |
| 726 | 24.07 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 728 | 24.08 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 20 |
| 810 | 24.12 | humidity | 60 | 720 | < th | dose independent | rect. | 14 | 6 |
| 845 | 24.13 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 18 |