Os09g0411700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0411700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PpiC-type peptidyl-prolyl cis-trans isomerase domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	14.2	(0.0154)	R²	:	0.507
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	0.862	(0.0398)	R²_dC	:	0.509	R²_C	:	0.507
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0192	(0.0323)	R²_dN8	:	0.000491	R²_N8	:	-0.00227
σ	:	0.29
deviance	:	38.39
__

_____

C
peak time of C	:	19.3
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
31.97	0.266	14.3	-0.851	0.853	0.182	-0.4	-2.28	-0.234	19.3	19.06	1630	--	--
36.75	0.282	14.2	-0.257	0.85	0.172	-0.359	--	-0.0868	19.3	14.78	4509	--	--
32.14	0.264	14.3	-0.824	0.843	0.169	--	-2.32	-0.229	19.3	18.81	2038	--	--
37.15	0.284	14.2	-0.246	0.86	0.167	--	--	-0.0709	19.3	12.47	4400	--	--
67.14	0.382	14.3	-1.35	--	0.603	--	-5.07	-0.346	--	25.54	1985	--	--
37.21	0.286	14.2	-0.175	0.861	--	-0.411	--	-0.0369	19.3	--	--	--	--
37.66	0.287	14.2	-0.167	0.86	--	--	--	-0.0377	19.3	--	--	--	--
74.32	0.403	14.2	-0.225	--	0.338	--	--	-0.0679	--	25.54	1985	--	--
38.27	0.29	14.2	--	0.855	0.107	--	--	-0.0319	19.4	12.47	4400	--	--
76.96	0.41	14.2	-0.181	--	--	--	--	-0.0522	--	--	--	--	--
38.39	0.29	14.2	--	0.862	--	--	--	-0.0192	19.3	--	--	--	--
65.55	0.377	14.2	--	--	0.637	--	--	-0.0832	--	24.28	471	--	--
77.83	0.412	14.2	--	--	--	--	--	-0.032	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	29.42	precipitation	0.1	43200	< th	dose independent	rect.	20	1
2	29.42	precipitation	0.1	43200	< th	dose dependent	rect.	20	1
3	29.49	precipitation	0.1	43200	> th	dose dependent	rect.	20	2
4	29.52	precipitation	0.1	43200	> th	dose dependent	rect.	14	9
5	29.53	precipitation	0.1	43200	> th	dose independent	rect.	20	1
7	29.56	precipitation	0.1	43200	< th	dose independent	rect.	17	5
8	29.56	precipitation	0.1	43200	< th	dose dependent	rect.	17	5
9	29.58	precipitation	0.1	43200	> th	dose independent	rect.	17	5
14	29.64	precipitation	0.1	43200	> th	dose dependent	rect.	14	5
18	29.65	precipitation	0.1	43200	> th	dose dependent	rect.	18	4
23	29.66	precipitation	0.1	43200	> th	dose dependent	rect.	17	6
38	29.72	precipitation	0.1	43200	< th	dose independent	rect.	19	3
39	29.72	precipitation	0.1	43200	< th	dose dependent	rect.	19	3
53	29.76	precipitation	0.1	43200	> th	dose dependent	rect.	12	7
91	29.84	precipitation	0.1	43200	> th	dose independent	rect.	14	4
94	29.86	precipitation	0.1	43200	< th	dose independent	rect.	15	4
97	29.86	precipitation	0.1	43200	< th	dose dependent	rect.	15	4
171	30.00	precipitation	0.1	43200	> th	dose dependent	sin	18	NA
175	30.02	humidity	90.0	14400	> th	dose independent	rect.	23	1
207	30.10	wind	1.0	14400	< th	dose dependent	rect.	19	7
224	30.14	wind	1.0	14400	> th	dose independent	rect.	19	2
228	30.15	radiation	30.0	14400	> th	dose independent	rect.	7	1
260	30.16	precipitation	0.1	43200	> th	dose dependent	rect.	15	2
288	30.20	wind	1.0	43200	> th	dose independent	rect.	2	1
300	30.21	humidity	90.0	43200	> th	dose independent	rect.	10	1
302	30.23	radiation	20.0	43200	> th	dose independent	rect.	9	2
307	30.24	wind	1.0	43200	> th	dose independent	rect.	21	1
317	30.25	wind	1.0	14400	< th	dose dependent	rect.	23	1
332	30.30	wind	7.0	43200	> th	dose independent	rect.	3	11
336	30.32	precipitation	0.1	43200	> th	dose independent	sin	18	NA
337	30.32	precipitation	0.1	43200	< th	dose independent	sin	18	NA
338	30.32	radiation	10.0	43200	> th	dose independent	rect.	7	2
341	30.32	precipitation	0.1	43200	< th	dose dependent	sin	18	NA
345	30.33	radiation	1.0	43200	< th	dose dependent	rect.	12	2
346	30.33	wind	1.0	14400	< th	dose dependent	rect.	22	3
352	30.34	radiation	1.0	43200	< th	dose independent	rect.	13	1
354	30.34	wind	7.0	43200	< th	dose independent	rect.	3	11
360	30.34	wind	7.0	43200	> th	dose independent	rect.	1	14
362	30.34	humidity	90.0	43200	> th	dose dependent	rect.	10	1
364	30.34	wind	1.0	14400	< th	dose dependent	rect.	20	5
368	30.35	temperature	20.0	4320	< th	dose independent	rect.	21	1
369	30.35	radiation	1.0	43200	> th	dose independent	rect.	13	1
376	30.35	wind	7.0	43200	> th	dose independent	rect.	21	18
399	30.37	wind	7.0	43200	< th	dose independent	rect.	21	18
442	30.40	radiation	20.0	43200	< th	dose dependent	rect.	8	6
446	30.41	radiation	10.0	43200	> th	dose independent	rect.	6	4
449	30.41	wind	1.0	14400	< th	dose independent	rect.	19	7
485	30.44	radiation	20.0	43200	< th	dose dependent	rect.	8	3
499	30.46	wind	7.0	43200	> th	dose independent	rect.	7	7
506	30.47	wind	1.0	43200	< th	dose independent	rect.	21	1
537	30.50	wind	7.0	43200	< th	dose independent	rect.	7	7
545	30.51	wind	7.0	43200	> th	dose independent	sin	5	NA
550	30.51	radiation	10.0	4320	> th	dose dependent	rect.	7	1
562	30.53	wind	7.0	43200	< th	dose independent	sin	5	NA
563	30.53	temperature	20.0	4320	> th	dose independent	rect.	21	1
572	30.54	radiation	10.0	43200	< th	dose independent	rect.	10	1
581	30.56	humidity	90.0	43200	> th	dose independent	rect.	10	3
610	30.58	wind	1.0	43200	< th	dose independent	rect.	19	1
615	30.59	humidity	70.0	43200	> th	dose independent	rect.	11	1
635	30.62	radiation	10.0	43200	> th	dose independent	sin	9	NA
636	30.62	wind	1.0	14400	< th	dose independent	rect.	23	1
639	30.62	atmosphere	1005.0	43200	< th	dose dependent	rect.	3	1
641	30.63	humidity	90.0	43200	< th	dose independent	rect.	12	1
645	30.63	wind	3.0	14400	< th	dose dependent	rect.	21	1
650	30.64	wind	1.0	43200	< th	dose independent	rect.	2	1
666	30.64	wind	1.0	43200	< th	dose dependent	rect.	19	1
715	30.68	wind	5.0	43200	> th	dose dependent	rect.	10	4
728	30.70	wind	7.0	43200	< th	dose independent	sin	10	NA
735	30.70	wind	9.0	43200	< th	dose independent	rect.	14	23
737	30.70	humidity	90.0	43200	> th	dose dependent	rect.	10	3
739	30.71	radiation	10.0	43200	< th	dose independent	rect.	18	5
741	30.71	radiation	40.0	43200	< th	dose independent	rect.	16	8
752	30.71	wind	5.0	43200	> th	dose dependent	rect.	2	13
756	30.72	humidity	90.0	43200	> th	dose independent	rect.	12	1
770	30.72	radiation	1.0	14400	< th	dose dependent	rect.	19	10
776	30.73	wind	7.0	43200	> th	dose independent	sin	10	NA
794	30.73	wind	5.0	43200	> th	dose dependent	rect.	21	18
796	30.74	humidity	70.0	43200	< th	dose independent	rect.	11	1
799	30.74	radiation	30.0	43200	< th	dose independent	rect.	5	2
801	30.74	wind	1.0	14400	> th	dose independent	rect.	19	7
807	30.74	humidity	80.0	43200	> th	dose dependent	rect.	12	1
848	30.77	wind	9.0	43200	> th	dose independent	rect.	14	23
856	30.78	precipitation	0.1	43200	> th	dose independent	rect.	10	1
857	30.78	precipitation	0.1	43200	< th	dose independent	rect.	10	1
862	30.78	wind	7.0	43200	< th	dose independent	rect.	19	11
866	30.78	precipitation	0.1	43200	> th	dose dependent	rect.	10	1
867	30.78	precipitation	0.1	43200	< th	dose dependent	rect.	10	1
868	30.78	wind	1.0	43200	< th	dose dependent	rect.	19	3
884	30.79	wind	7.0	43200	> th	dose dependent	rect.	19	20
890	30.80	humidity	90.0	14400	> th	dose independent	rect.	20	8
903	30.81	wind	3.0	14400	> th	dose independent	rect.	13	1
905	30.81	wind	7.0	43200	> th	dose independent	rect.	19	11
974	30.84	radiation	40.0	4320	< th	dose dependent	rect.	7	1
986	30.85	wind	7.0	43200	> th	dose independent	rect.	11	1
987	30.85	humidity	90.0	43200	< th	dose independent	rect.	10	1
988	30.85	radiation	1.0	43200	> th	dose independent	rect.	4	1