Os09g0411600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os09g0411600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.39 | 0.635 | 3.73 | -0.14 | 1.26 | -2.29 | 1.91 | 8.46 | 0.352 | 18.8 | 29.8 | 328 | -- | -- |
| 183.31 | 0.631 | 3.66 | 0.632 | 1.18 | -1.48 | 1.85 | -- | 0.338 | 18.9 | 29.19 | 353 | -- | -- |
| 189.14 | 0.641 | 3.7 | 0.0446 | 1.22 | -2.1 | -- | 5.44 | 0.376 | 18.6 | 29.6 | 336 | -- | -- |
| 188.85 | 0.64 | 3.66 | 0.604 | 1.12 | -1.49 | -- | -- | 0.327 | 18.9 | 29.2 | 352 | -- | -- |
| 225.36 | 0.699 | 3.69 | 0.0794 | -- | -2.53 | -- | 2.99 | 0.132 | -- | 29.08 | 487 | -- | -- |
| 233.91 | 0.717 | 3.65 | 0.874 | 1.83 | -- | 2.18 | -- | 0.427 | 18.3 | -- | -- | -- | -- |
| 245.4 | 0.734 | 3.65 | 0.851 | 1.84 | -- | -- | -- | 0.435 | 18.2 | -- | -- | -- | -- |
| 219.02 | 0.689 | 3.67 | 0.436 | -- | -2.11 | -- | -- | 0.122 | -- | 28.25 | 449 | -- | -- |
| 198.21 | 0.656 | 3.67 | -- | 1.03 | -1.58 | -- | -- | 0.248 | 19 | 29 | 357 | -- | -- |
| 421.39 | 0.959 | 3.61 | 0.799 | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
| 264.47 | 0.761 | 3.67 | -- | 1.83 | -- | -- | -- | 0.34 | 18.2 | -- | -- | -- | -- |
| 223.28 | 0.696 | 3.69 | -- | -- | -2.18 | -- | -- | 0.0694 | -- | 28.26 | 467 | -- | -- |
| 438.25 | 0.977 | 3.63 | -- | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 13 | 179.54 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 41 | 181.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 44 | 181.56 | temperature | 25 | 90 | > th | dose dependent | sin | 19 | NA |
| 53 | 181.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 62 | 182.14 | temperature | 25 | 10 | > th | dose dependent | sin | 17 | NA |
| 70 | 182.28 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 312 | 186.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 346 | 186.43 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 361 | 186.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 372 | 187.01 | temperature | 30 | 270 | > th | dose independent | sin | 0 | NA |
| 373 | 187.01 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 375 | 187.11 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 380 | 187.17 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 8 |
| 385 | 187.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 3 |
| 432 | 187.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 449 | 187.91 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 452 | 187.99 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 8 |
| 453 | 187.99 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 23 |
| 485 | 188.45 | temperature | 30 | 90 | < th | dose dependent | sin | 19 | NA |
| 541 | 188.91 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 648 | 189.07 | temperature | 25 | 720 | > th | dose dependent | sin | 5 | NA |
| 684 | 189.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 16 |
| 698 | 189.60 | temperature | 30 | 10 | < th | dose dependent | sin | 18 | NA |
| 702 | 189.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 703 | 189.64 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 756 | 190.34 | temperature | 30 | 270 | < th | dose independent | sin | 20 | NA |
| 910 | 191.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 15 |