Os09g0411500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0411500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 554.58 | 1.11 | 6.26 | -1.53 | 0.501 | -4.38 | -2.5 | 13.4 | -1.57 | 13.1 | 26.7 | 5987 | -- | -- |
| 518.29 | 1.06 | 6.5 | -1.4 | 0.49 | -5.47 | -2.22 | -- | -1.26 | 12.9 | 21.45 | 24812 | -- | -- |
| 579.45 | 1.12 | 6.27 | -1.65 | 0.518 | -4.34 | -- | 13.3 | -1.59 | 12 | 26.69 | 5993 | -- | -- |
| 536.73 | 1.08 | 6.46 | -1.35 | 0.377 | -5.56 | -- | -- | -1.21 | 12.3 | 21.41 | 24913 | -- | -- |
| 595.69 | 1.14 | 6.28 | -1.67 | -- | -4.39 | -- | 13.2 | -1.56 | -- | 26.59 | 5998 | -- | -- |
| 1066.55 | 1.53 | 6.97 | -6.95 | 0.518 | -- | -1.94 | -- | -3.49 | 12.2 | -- | -- | -- | -- |
| 1081.51 | 1.54 | 6.97 | -7.03 | 0.547 | -- | -- | -- | -3.5 | 11.1 | -- | -- | -- | -- |
| 544.76 | 1.09 | 6.43 | -1.06 | -- | -5.77 | -- | -- | -1.07 | -- | 21.5 | 25064 | -- | -- |
| 542.62 | 1.08 | 6.34 | -- | 0.407 | -6.36 | -- | -- | -0.795 | 11.6 | 21.2 | 25653 | -- | -- |
| 1100.15 | 1.55 | 6.98 | -7.05 | -- | -- | -- | -- | -3.51 | -- | -- | -- | -- | -- |
| 2385.08 | 2.28 | 6.79 | -- | 0.624 | -- | -- | -- | -2.72 | 11.9 | -- | -- | -- | -- |
| 550.97 | 1.09 | 6.36 | -- | -- | -6.43 | -- | -- | -0.763 | -- | 21.16 | 25479 | -- | -- |
| 2409.56 | 2.29 | 6.8 | -- | -- | -- | -- | -- | -2.72 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 479.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 2 | 480.48 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 3 | 480.82 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 5 | 484.49 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 6 | 484.61 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 9 | 486.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 16 | 489.85 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 22 | 493.07 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 24 | 493.17 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 31 | 493.39 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 42 | 493.96 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 51 | 496.43 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 58 | 496.87 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 59 | 496.99 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 96 | 498.71 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 102 | 498.80 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 111 | 500.73 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 114 | 501.23 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 124 | 503.83 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 125 | 503.91 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 135 | 504.12 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 141 | 505.98 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 145 | 507.43 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 150 | 508.28 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 153 | 508.57 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 154 | 508.60 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 161 | 509.25 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 169 | 510.04 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 170 | 510.20 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 182 | 510.94 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 213 | 512.80 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 220 | 513.69 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 255 | 515.98 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 257 | 516.02 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 265 | 516.51 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 290 | 517.60 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 11 | NA |
| 292 | 517.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 339 | 519.18 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 18 |
| 392 | 520.63 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 428 | 521.62 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 483 | 523.35 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 501 | 523.79 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 505 | 523.91 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 510 | 524.11 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 512 | 524.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 523 | 524.50 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 598 | 526.44 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 612 | 526.63 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 622 | 526.88 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 623 | 526.88 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 641 | 527.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 643 | 527.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 770 | 529.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 772 | 529.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 855 | 530.98 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 870 | 531.06 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 912 | 531.73 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 913 | 531.74 | humidity | 90.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 980 | 533.44 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |