Os09g0409100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0409100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.97 | 0.535 | 2.82 | -0.65 | 0.0548 | -34.3 | 0.353 | -103 | -0.116 | 13.8 | 1 | 91 | 4 | 1 |
| 670.38 | 1.21 | 3.49 | 1.35 | 0.857 | -15.8 | 0.124 | -- | -0.549 | 11.3 | 0.7068 | 69 | 4.1 | 0.841 |
| 132.39 | 0.536 | 2.82 | -0.641 | 0.0627 | -34.3 | -- | -103 | -0.113 | 15.6 | 0.9941 | 92 | 4 | 0.994 |
| 433.83 | 0.97 | 3.19 | -0.624 | 0.278 | -15.4 | -- | -- | -0.308 | 23.8 | 0.7359 | 69 | 4.1 | 0.835 |
| 132.63 | 0.536 | 2.82 | -0.64 | -- | -34.3 | -- | -103 | -0.115 | -- | 1.024 | 92 | 4 | 0.997 |
| 184.67 | 0.637 | 3 | -0.368 | 0.0222 | -- | -1 | -- | -0.165 | 4.53 | -- | -- | -- | -- |
| 187.27 | 0.641 | 3 | -0.361 | 0.0457 | -- | -- | -- | -0.16 | 8.92 | -- | -- | -- | -- |
| 187.35 | 0.64 | 3 | -0.36 | -- | -0.131 | -- | -- | -0.16 | -- | 0.5956 | 74 | 4.14 | 0.985 |
| 350.81 | 0.872 | 3.07 | -- | 0.281 | -12.2 | -- | -- | -0.507 | 12.8 | 0.4766 | 69 | 4.09 | 0.848 |
| 187.39 | 0.64 | 3 | -0.361 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 190.7 | 0.646 | 2.99 | -- | 0.0456 | -- | -- | -- | -0.119 | 9.52 | -- | -- | -- | -- |
| 163.86 | 0.596 | 3.05 | -- | -- | 2.43 | -- | -- | -0.165 | -- | 8.839 | 80 | 2.97 | 1.71 |
| 190.82 | 0.645 | 2.99 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.97 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 11 | 131.97 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 21 | 134.90 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 24 | 137.63 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 30 | 138.92 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 82 | 142.73 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 96 | 143.84 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 18 | 12 |
| 98 | 144.49 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 122 | 146.70 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 190 | 154.52 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 218 | 157.19 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 247 | 159.54 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 12 |
| 336 | 162.94 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 339 | 163.13 | humidity | 80.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 341 | 163.13 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 412 | 165.12 | wind | 5.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 423 | 165.28 | wind | 7.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 425 | 165.28 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 428 | 165.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 432 | 165.28 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 437 | 165.28 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 438 | 165.28 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 439 | 165.28 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 443 | 165.28 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 505 | 165.67 | temperature | 20.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 523 | 166.14 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 6 | 23 |
| 525 | 166.23 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 1 |
| 527 | 166.23 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 533 | 166.34 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 535 | 166.34 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 536 | 166.34 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 539 | 166.34 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 541 | 166.34 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 543 | 166.34 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 546 | 166.34 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 23 |
| 560 | 166.58 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 23 |
| 561 | 166.58 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 23 |
| 584 | 166.75 | wind | 9.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 598 | 166.75 | wind | 9.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 634 | 167.03 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 658 | 167.41 | wind | 1.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 663 | 167.49 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 719 | 168.10 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 724 | 168.14 | temperature | 10.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 734 | 168.14 | temperature | 10.0 | 43200 | < th | dose independent | rect. | 8 | 12 |
| 735 | 168.14 | temperature | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 745 | 168.14 | temperature | 10.0 | 43200 | < th | dose dependent | rect. | 8 | 12 |
| 754 | 168.17 | wind | 9.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 755 | 168.17 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 761 | 168.17 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 791 | 168.17 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 792 | 168.17 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 798 | 168.17 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 827 | 168.20 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 23 |
| 879 | 168.93 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 880 | 168.95 | radiation | 30.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 895 | 169.23 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 896 | 169.23 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 909 | 169.36 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 936 | 169.53 | radiation | 40.0 | 30 | < th | dose independent | rect. | 6 | 23 |
| 972 | 169.79 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 990 | 169.99 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 995 | 170.05 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 997 | 170.06 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 998 | 170.08 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 20 | 2 |