Os09g0408800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0408800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.87 | 0.634 | 4.72 | 3.13 | 0.658 | 2.7 | 0.434 | 3.32 | 0.364 | 4.91 | 0.27 | 1441 | -- | -- |
| 187.91 | 0.638 | 4.72 | 3.54 | 0.657 | 2.07 | 0.424 | -- | 0.397 | 5.12 | 0.24 | 1436 | -- | -- |
| 182.22 | 0.629 | 4.72 | 3.13 | 0.669 | 2.69 | -- | 3.31 | 0.367 | 4.63 | 0.2694 | 1434 | -- | -- |
| 187.13 | 0.637 | 4.69 | 3.45 | 0.672 | 1.96 | -- | -- | 0.39 | 4.29 | 0.24 | 1424 | -- | -- |
| 204.65 | 0.666 | 4.72 | 3.21 | -- | 2.64 | -- | 2.93 | 0.401 | -- | 0.27 | 1452 | -- | -- |
| 229.31 | 0.71 | 4.73 | 2.98 | 0.631 | -- | 0.23 | -- | 0.164 | 4.92 | -- | -- | -- | -- |
| 229.44 | 0.709 | 4.73 | 2.98 | 0.632 | -- | -- | -- | 0.163 | 4.86 | -- | -- | -- | -- |
| 208.17 | 0.672 | 4.68 | 3.43 | -- | 2.01 | -- | -- | 0.415 | -- | 0.31 | 1507 | -- | -- |
| 442.09 | 0.979 | 4.71 | -- | 0.643 | 1.09 | -- | -- | 0.169 | 3.45 | 6.447 | 1370 | -- | -- |
| 250.55 | 0.74 | 4.74 | 3.01 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 463.81 | 1.01 | 4.8 | -- | 0.687 | -- | -- | -- | -0.169 | 4.73 | -- | -- | -- | -- |
| 436.1 | 0.973 | 4.81 | -- | -- | 1.6 | -- | -- | -0.076 | -- | 7.95 | 3561 | -- | -- |
| 488.83 | 1.03 | 4.81 | -- | -- | -- | -- | -- | -0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.15 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 2 | 178.78 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 178.95 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 4 | 178.98 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 5 | 179.27 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 6 | 179.36 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 25 | 179.41 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 27 | 179.42 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 32 | 179.54 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 37 | 180.07 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 41 | 180.11 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 47 | 180.18 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 59 | 180.19 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 60 | 180.37 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 61 | 180.43 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 64 | 180.46 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 68 | 180.65 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 80 | 180.80 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 81 | 180.81 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 86 | 181.04 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 88 | 181.13 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 91 | 181.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 92 | 181.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 93 | 181.20 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 94 | 181.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 106 | 181.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 108 | 181.31 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 112 | 181.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 120 | 181.38 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 123 | 181.42 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 124 | 181.43 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 127 | 181.47 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 173 | 181.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 196 | 181.90 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 274 | 182.20 | radiation | 1.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 285 | 182.42 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 289 | 182.61 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 306 | 182.70 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 356 | 183.03 | radiation | 1.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 419 | 183.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 444 | 183.84 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 464 | 183.92 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 468 | 183.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 486 | 184.01 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 490 | 184.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 494 | 184.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 512 | 184.09 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 513 | 184.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 525 | 184.10 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 535 | 184.14 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 564 | 184.19 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 567 | 184.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 568 | 184.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 606 | 184.30 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 607 | 184.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 613 | 184.33 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 633 | 184.36 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 682 | 184.53 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 705 | 184.60 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 745 | 184.69 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 783 | 184.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 892 | 185.20 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 906 | 185.23 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 918 | 185.29 | radiation | 10.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 946 | 185.47 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 966 | 185.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 968 | 185.64 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 987 | 185.71 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 8 | 1 |