Os09g0407800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os09g0407800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.62 | 0.328 | 7.77 | 1.36 | 1.23 | -0.417 | 0.565 | 4.19 | -0.0842 | 16.9 | 19.54 | 3778 | -- | -- |
| 61.24 | 0.364 | 7.9 | 0.554 | 1.22 | -0.558 | 0.471 | -- | -0.261 | 16.9 | 11.1 | 23800 | -- | -- |
| 49.39 | 0.327 | 7.77 | 1.36 | 1.23 | -0.423 | -- | 4.17 | -0.0828 | 16.9 | 19.53 | 3699 | -- | -- |
| 61.74 | 0.366 | 7.9 | 0.541 | 1.23 | -0.559 | -- | -- | -0.259 | 16.9 | 10.74 | 22400 | -- | -- |
| 128.52 | 0.528 | 7.75 | 1.4 | -- | -0.558 | -- | 4.16 | -0.0864 | -- | 19.99 | 3971 | -- | -- |
| 65.65 | 0.38 | 7.95 | 0.071 | 1.23 | -- | 0.457 | -- | -0.471 | 16.9 | -- | -- | -- | -- |
| 66.17 | 0.381 | 7.95 | 0.0728 | 1.23 | -- | -- | -- | -0.468 | 16.8 | -- | -- | -- | -- |
| 134.79 | 0.543 | 7.96 | -0.11 | -- | 0.704 | -- | -- | -0.614 | -- | 19.99 | 3971 | -- | -- |
| 64.22 | 0.373 | 7.94 | -- | 1.22 | -0.301 | -- | -- | -0.409 | 16.9 | 9.558 | 8037 | -- | -- |
| 146.3 | 0.565 | 7.94 | 0.0269 | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
| 66.31 | 0.381 | 7.95 | -- | 1.23 | -- | -- | -- | -0.477 | 16.8 | -- | -- | -- | -- |
| 135.1 | 0.543 | 7.96 | -- | -- | 0.681 | -- | -- | -0.598 | -- | 19.99 | 3971 | -- | -- |
| 146.32 | 0.565 | 7.94 | -- | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 4 | 45.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 7 | 45.36 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 8 | 45.43 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 23 | 46.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 36 | 46.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 56 | 46.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 86 | 47.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 90 | 47.48 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 102 | 47.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 124 | 47.77 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 140 | 47.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 142 | 47.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 143 | 47.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 150 | 47.85 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 155 | 47.90 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 161 | 47.96 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 163 | 47.96 | radiation | 40 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 165 | 47.97 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 171 | 48.00 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 186 | 48.00 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 189 | 48.02 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 209 | 48.05 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 228 | 48.09 | temperature | 15 | 43200 | < th | dose dependent | sin | 3 | NA |
| 255 | 48.13 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 262 | 48.14 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 333 | 48.27 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 341 | 48.27 | temperature | 15 | 43200 | < th | dose dependent | rect. | 11 | 22 |
| 345 | 48.28 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 348 | 48.28 | temperature | 15 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 364 | 48.29 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 380 | 48.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 388 | 48.30 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 23 |
| 452 | 48.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 464 | 48.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 465 | 48.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 477 | 48.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 506 | 48.39 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 509 | 48.39 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 576 | 48.47 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 627 | 48.54 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 628 | 48.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 648 | 48.57 | temperature | 15 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 668 | 48.61 | temperature | 15 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 696 | 48.65 | temperature | 15 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 754 | 48.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 763 | 48.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 783 | 48.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 843 | 48.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 849 | 48.80 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 864 | 48.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 873 | 48.83 | temperature | 15 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 875 | 48.83 | temperature | 15 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 913 | 48.88 | temperature | 10 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 981 | 48.93 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 988 | 48.94 | temperature | 15 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 993 | 48.94 | temperature | 15 | 43200 | < th | dose dependent | rect. | 21 | 1 |