Os09g0407300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0407300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.74 | 0.325 | 7.3 | 1.05 | 0.989 | 1.09 | 0.531 | -2.49 | -0.272 | 2.97 | 25.6 | 1809 | -- | -- |
| 53.59 | 0.341 | 7.35 | 0.933 | 1.02 | 1.6 | 0.392 | -- | -0.305 | 2.64 | 21.96 | 3618 | -- | -- |
| 47.87 | 0.322 | 7.3 | 1.11 | 1.09 | 0.985 | -- | -2.32 | -0.265 | 2.86 | 25.9 | 2477 | -- | -- |
| 52.29 | 0.337 | 7.35 | 1.01 | 1.04 | 1.6 | -- | -- | -0.342 | 3.09 | 20.63 | 9433 | -- | -- |
| 66.9 | 0.383 | 7.33 | 0.814 | -- | 2.18 | -- | -1.9 | -0.29 | -- | 36.04 | 4710 | -- | -- |
| 78.53 | 0.415 | 7.43 | 0.13 | 0.996 | -- | 0.515 | -- | -0.671 | 3.08 | -- | -- | -- | -- |
| 79.41 | 0.417 | 7.43 | 0.119 | 0.997 | -- | -- | -- | -0.674 | 3.05 | -- | -- | -- | -- |
| 69.98 | 0.391 | 7.37 | 0.551 | -- | 2.14 | -- | -- | -0.363 | -- | 36.04 | 4710 | -- | -- |
| 58.61 | 0.357 | 7.39 | -- | 1.09 | 1.2 | -- | -- | -0.504 | 2.85 | 23.6 | 1119 | -- | -- |
| 136.29 | 0.546 | 7.43 | 0.162 | -- | -- | -- | -- | -0.648 | -- | -- | -- | -- | -- |
| 79.78 | 0.418 | 7.44 | -- | 0.999 | -- | -- | -- | -0.687 | 3.05 | -- | -- | -- | -- |
| 76.4 | 0.407 | 7.38 | -- | -- | 1.73 | -- | -- | -0.415 | -- | 30.97 | 38 | -- | -- |
| 136.98 | 0.546 | 7.44 | -- | -- | -- | -- | -- | -0.666 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 3 | 45.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 4 | 45.86 | radiation | 30 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 9 | 46.03 | radiation | 30 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 11 | 46.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 16 | 46.28 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 39 | 46.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 44 | 46.57 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 24 | 2 |
| 45 | 46.60 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 48 | 46.65 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 62 | 46.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 64 | 46.74 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 85 | 46.80 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 87 | 46.80 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 88 | 46.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 98 | 46.84 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 105 | 46.85 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 111 | 46.87 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 113 | 46.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 122 | 46.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 149 | 46.93 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 150 | 46.93 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 151 | 46.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 169 | 46.98 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 194 | 47.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 195 | 47.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 223 | 47.06 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 295 | 47.15 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 302 | 47.16 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 2 | NA |
| 311 | 47.17 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 2 | NA |
| 332 | 47.20 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 359 | 47.23 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 462 | 47.34 | temperature | 20 | 4320 | > th | dose dependent | sin | 22 | NA |
| 591 | 47.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 622 | 47.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 629 | 47.52 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 638 | 47.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 704 | 47.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 711 | 47.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 718 | 47.59 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 767 | 47.63 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 768 | 47.63 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 785 | 47.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 809 | 47.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 830 | 47.67 | temperature | 30 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 840 | 47.68 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 11 | NA |
| 842 | 47.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 852 | 47.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 942 | 47.74 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 952 | 47.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 4 |
| 957 | 47.75 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 998 | 47.77 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 24 | 2 |