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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0405200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0318) R2 : 0.0244
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.226 (0.0669) R2dN8 : 0.0316 R2N8 : 0.0244
σ : 0.599
deviance : 164.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.88 0.581 3.25 1.11 0.105 1.28 -0.218 -8.13 0.21 5.81 29.9 4077 -- --
154.05 0.578 3.32 0.304 0.118 0.742 -0.18 -- 0.528 5.14 21 10743 -- --
152.92 0.576 3.25 1.11 0.106 1.3 -- -8.21 0.209 4.95 30 4024 -- --
153.14 0.576 3.33 0.332 0.111 0.757 -- -- 0.491 5.11 20.8 14995 -- --
153.49 0.577 3.24 1.13 -- 1.31 -- -8.36 0.218 -- 30 3908 -- --
160.45 0.594 3.4 -0.347 0.115 -- -0.268 -- 0.184 6.72 -- -- -- --
160.62 0.593 3.4 -0.352 0.115 -- -- -- 0.185 6.35 -- -- -- --
153.76 0.578 3.33 0.323 -- 0.748 -- -- 0.484 -- 20.7 15002 -- --
153.4 0.577 3.35 -- 0.12 0.538 -- -- 0.402 6.93 22.02 8943 -- --
161.31 0.593 3.4 -0.349 -- -- -- -- 0.187 -- -- -- -- --
163.89 0.599 3.39 -- 0.11 -- -- -- 0.224 6.52 -- -- -- --
153.99 0.578 3.36 -- -- 0.541 -- -- 0.384 -- 21.5 8925 -- --
164.52 0.599 3.39 -- -- -- -- -- 0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.91 wind 1.0 30 < th dose dependent rect. 21 6
11 140.14 wind 1.0 10 < th dose independent rect. 14 13
13 140.24 wind 1.0 10 < th dose independent rect. 17 10
15 140.34 wind 1.0 10 < th dose independent rect. 21 6
19 141.41 wind 1.0 10 < th dose independent rect. 23 4
25 142.48 wind 1.0 30 < th dose dependent rect. 10 17
29 142.83 radiation 1.0 43200 < th dose dependent rect. 3 1
36 143.67 wind 1.0 10 < th dose dependent rect. 2 1
37 143.85 wind 1.0 30 < th dose dependent rect. 8 19
39 143.88 wind 1.0 10 < th dose independent rect. 8 19
43 144.22 wind 1.0 30 < th dose independent rect. 1 2
59 144.66 temperature 20.0 30 > th dose independent rect. 2 1
64 144.71 atmosphere 1000.0 30 > th dose independent rect. 2 1
69 144.72 temperature 20.0 30 > th dose dependent rect. 2 1
70 144.73 humidity 80.0 30 > th dose independent rect. 2 1
72 144.75 wind 5.0 30 < th dose independent rect. 2 1
78 144.78 atmosphere 995.0 30 > th dose dependent rect. 2 1
80 144.81 humidity 60.0 30 > th dose dependent rect. 2 1
82 144.82 temperature 25.0 30 < th dose independent rect. 2 1
85 144.83 temperature 10.0 30 > th dose independent rect. 2 1
88 144.83 humidity 50.0 30 > th dose independent rect. 2 1
92 144.83 atmosphere 1010.0 30 < th dose independent rect. 2 1
94 144.83 radiation 1.0 30 < th dose independent rect. 2 1
99 144.83 precipitation 0.1 30 < th dose independent rect. 2 1
100 144.83 temperature 10.0 30 > th dose independent rect. 3 23
101 144.83 radiation 1.0 30 < th dose dependent rect. 2 1
106 144.83 precipitation 0.1 30 < th dose dependent rect. 2 1
114 145.01 atmosphere 1015.0 30 < th dose dependent rect. 2 1
121 145.10 wind 9.0 30 < th dose independent rect. 3 23
125 145.18 temperature 30.0 30 < th dose dependent rect. 2 1
150 145.57 wind 9.0 1440 < th dose independent rect. 3 1
151 145.57 temperature 10.0 1440 > th dose independent rect. 3 1
154 145.57 temperature 30.0 1440 < th dose independent rect. 3 1
158 145.57 humidity 50.0 1440 > th dose independent rect. 3 1
167 145.57 atmosphere 995.0 1440 > th dose independent rect. 3 1
168 145.57 radiation 1.0 1440 < th dose independent rect. 3 1
192 145.57 temperature 10.0 1440 > th dose independent rect. 4 23
235 145.92 wind 1.0 30 > th dose independent rect. 2 1
239 146.36 atmosphere 995.0 10 > th dose independent rect. 3 23
260 147.06 precipitation 0.1 30 < th dose independent rect. 3 23
261 147.06 precipitation 0.1 30 < th dose dependent rect. 3 23
276 147.78 wind 1.0 10 > th dose independent sin 17 NA
277 147.80 temperature 10.0 90 > th dose dependent rect. 3 22
292 148.76 wind 1.0 10 < th dose independent sin 17 NA
386 150.25 humidity 50.0 30 > th dose independent rect. 3 23
399 150.44 wind 1.0 10 < th dose dependent sin 17 NA
400 150.48 atmosphere 1015.0 30 < th dose independent rect. 3 23
405 150.52 temperature 30.0 720 < th dose independent rect. 15 12
415 150.68 temperature 10.0 720 > th dose dependent rect. 3 2
424 150.75 wind 1.0 270 < th dose dependent rect. 22 1
430 150.81 humidity 90.0 90 < th dose independent rect. 2 1
441 150.93 temperature 25.0 30 > th dose independent rect. 24 10
443 150.95 wind 1.0 270 < th dose independent rect. 22 1
447 150.97 wind 9.0 10 < th dose dependent rect. 3 23
490 151.54 wind 1.0 43200 < th dose dependent rect. 16 4
492 151.55 temperature 25.0 4320 < th dose independent rect. 5 3
505 151.61 temperature 25.0 4320 > th dose independent rect. 5 3
507 151.62 wind 1.0 43200 > th dose independent rect. 19 1
513 151.65 temperature 20.0 14400 < th dose independent rect. 22 1
516 151.68 temperature 20.0 14400 > th dose independent rect. 6 1
518 151.69 temperature 20.0 14400 > th dose independent rect. 22 1
522 151.70 radiation 1.0 14400 < th dose dependent rect. 2 3
523 151.71 temperature 20.0 14400 < th dose independent rect. 6 1
542 151.80 temperature 20.0 14400 > th dose independent rect. 3 1
545 151.82 temperature 20.0 14400 < th dose independent rect. 3 1
548 151.82 temperature 20.0 14400 < th dose independent rect. 22 9
554 151.84 temperature 30.0 720 < th dose independent rect. 15 22
555 151.84 radiation 20.0 720 < th dose dependent rect. 17 8
558 151.86 temperature 20.0 14400 < th dose independent rect. 22 6
591 151.90 temperature 20.0 14400 > th dose independent rect. 22 9
630 151.95 temperature 20.0 14400 > th dose independent rect. 22 6
664 151.98 temperature 25.0 30 > th dose independent rect. 18 16
724 152.06 temperature 20.0 14400 < th dose independent sin 9 NA
756 152.09 temperature 20.0 14400 > th dose independent sin 9 NA
792 152.14 temperature 30.0 720 < th dose independent rect. 15 6
848 152.21 temperature 30.0 14400 < th dose independent rect. 15 1
853 152.21 atmosphere 1015.0 720 < th dose independent rect. 3 12
858 152.21 temperature 25.0 10 > th dose dependent rect. 18 15
861 152.22 precipitation 0.1 43200 < th dose independent rect. 8 3
871 152.22 precipitation 0.1 43200 < th dose dependent rect. 8 3
872 152.22 temperature 20.0 90 > th dose dependent rect. 3 6
874 152.23 temperature 30.0 14400 > th dose independent rect. 15 1
875 152.23 wind 5.0 14400 < th dose independent rect. 9 3
883 152.24 wind 5.0 14400 > th dose independent rect. 10 1
909 152.25 temperature 20.0 14400 < th dose dependent rect. 4 1
955 152.29 wind 1.0 43200 < th dose dependent rect. 24 4
966 152.32 wind 5.0 14400 < th dose independent rect. 10 1
982 152.33 temperature 25.0 4320 > th dose dependent rect. 5 3
990 152.34 wind 5.0 14400 > th dose independent rect. 9 3