Os09g0404900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0404900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 261.31 | 0.759 | 4.17 | -0.67 | 0.654 | 1.26 | -0.55 | 1.57 | 0.102 | 11.8 | 22.18 | 1815 | -- | -- |
| 265.56 | 0.759 | 4.09 | -0.161 | 0.496 | 1.17 | -0.668 | -- | 0.313 | 11.6 | 23.6 | 2314 | -- | -- |
| 262.47 | 0.755 | 4.17 | -0.682 | 0.666 | 1.29 | -- | 1.6 | 0.101 | 11.7 | 22.09 | 1785 | -- | -- |
| 267.44 | 0.762 | 4.09 | -0.173 | 0.512 | 1.18 | -- | -- | 0.319 | 11.7 | 23.7 | 2167 | -- | -- |
| 281.43 | 0.781 | 4.16 | -0.401 | -- | 1.37 | -- | 0.992 | 0.23 | -- | 24.49 | 2360 | -- | -- |
| 322.24 | 0.842 | 4.2 | -0.651 | 0.673 | -- | -0.594 | -- | -0.19 | 11.7 | -- | -- | -- | -- |
| 323.74 | 0.843 | 4.21 | -0.675 | 0.676 | -- | -- | -- | -0.193 | 11.6 | -- | -- | -- | -- |
| 279.15 | 0.778 | 4.12 | -0.151 | -- | 1.59 | -- | -- | 0.26 | -- | 24.9 | 2378 | -- | -- |
| 268.15 | 0.763 | 4.09 | -- | 0.511 | 1.22 | -- | -- | 0.351 | 11.7 | 23.64 | 2167 | -- | -- |
| 352.48 | 0.877 | 4.22 | -0.694 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 335.75 | 0.857 | 4.19 | -- | 0.684 | -- | -- | -- | -0.118 | 11.7 | -- | -- | -- | -- |
| 279.55 | 0.779 | 4.11 | -- | -- | 1.65 | -- | -- | 0.281 | -- | 24.83 | 2397 | -- | -- |
| 365.19 | 0.892 | 4.2 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 2 | 255.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 6 | 256.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 47 | 258.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 49 | 259.00 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 50 | 259.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 51 | 259.03 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 56 | 259.18 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 67 | 259.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 93 | 259.60 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 3 |
| 334 | 261.21 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 363 | 261.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 475 | 262.33 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 489 | 262.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 496 | 262.50 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 548 | 262.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 713 | 263.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 735 | 263.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 907 | 264.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 22 |