Os09g0400700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0400700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.44 | 0.53 | 10.8 | -1.14 | 1.15 | -1.76 | 0.904 | 0.173 | -0.842 | 13 | 8.115 | 15 | -- | -- |
| 127.56 | 0.526 | 10.8 | -1.16 | 1.13 | -1.78 | 0.811 | -- | -0.854 | 12.9 | 8.096 | 14 | -- | -- |
| 128.12 | 0.527 | 10.8 | -1.13 | 1.12 | -1.78 | -- | -0.462 | -0.844 | 13.1 | 8.13 | 9 | -- | -- |
| 129.38 | 0.53 | 10.7 | -1.11 | 1.13 | -1.79 | -- | -- | -0.819 | 13.1 | 8.13 | 9 | -- | -- |
| 148.66 | 0.568 | 10.8 | -0.859 | -- | -2.5 | -- | -0.394 | -0.892 | -- | 7.685 | 31 | -- | -- |
| 179.56 | 0.628 | 10.7 | -1.15 | 3.13 | -- | 0.725 | -- | -0.725 | 12.2 | -- | -- | -- | -- |
| 181.84 | 0.631 | 10.7 | -1.12 | 3.13 | -- | -- | -- | -0.721 | 12.2 | -- | -- | -- | -- |
| 147.78 | 0.566 | 10.8 | -1.1 | -- | -2.56 | -- | -- | -0.926 | -- | 8.514 | 25 | -- | -- |
| 162.32 | 0.593 | 10.7 | -- | 1.1 | -1.79 | -- | -- | -0.745 | 13 | 8.625 | 16 | -- | -- |
| 798.31 | 1.32 | 10.7 | -1.22 | -- | -- | -- | -- | -0.769 | -- | -- | -- | -- | -- |
| 214.98 | 0.686 | 10.7 | -- | 3.15 | -- | -- | -- | -0.597 | 12.2 | -- | -- | -- | -- |
| 179.68 | 0.624 | 10.8 | -- | -- | -2.58 | -- | -- | -0.806 | -- | 9.079 | 28 | -- | -- |
| 837.79 | 1.35 | 10.7 | -- | -- | -- | -- | -- | -0.633 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.61 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 126.77 | radiation | 1.0 | 30 | > th | dose independent | sin | 2 | NA |
| 3 | 127.00 | radiation | 1.0 | 30 | < th | dose independent | sin | 2 | NA |
| 4 | 128.08 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 7 | 128.43 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 16 | 129.10 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 17 | 129.21 | radiation | 10.0 | 30 | < th | dose dependent | sin | 3 | NA |
| 19 | 129.23 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 20 | 129.23 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 25 | 129.76 | radiation | 1.0 | 90 | < th | dose independent | rect. | 2 | 15 |
| 36 | 130.44 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 101 | 133.00 | radiation | 1.0 | 90 | < th | dose independent | rect. | 2 | 8 |
| 114 | 133.30 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 8 |
| 129 | 133.87 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 136 | 134.26 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 189 | 135.93 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 243 | 137.01 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 286 | 138.28 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 12 |
| 328 | 139.25 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 21 |
| 432 | 141.05 | temperature | 20.0 | 90 | > th | dose independent | rect. | 2 | 3 |
| 442 | 141.25 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 2 | 3 |
| 445 | 141.41 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 2 | 3 |
| 470 | 141.63 | humidity | 80.0 | 90 | > th | dose independent | rect. | 2 | 3 |
| 500 | 142.27 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 20 | 23 |
| 538 | 142.91 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 577 | 143.53 | wind | 9.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 578 | 143.53 | temperature | 10.0 | 90 | > th | dose independent | rect. | 2 | 3 |
| 580 | 143.53 | temperature | 30.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 581 | 143.53 | humidity | 50.0 | 90 | > th | dose independent | rect. | 2 | 3 |
| 584 | 143.53 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 2 | 3 |
| 585 | 143.53 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 590 | 143.53 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 21 |
| 602 | 143.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 21 |
| 605 | 143.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 613 | 143.86 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 2 | 3 |
| 614 | 143.86 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 622 | 144.02 | wind | 9.0 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 638 | 144.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 22 |
| 639 | 144.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 640 | 144.29 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 21 |
| 646 | 144.43 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 654 | 144.54 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 659 | 144.62 | wind | 3.0 | 90 | < th | dose independent | rect. | 2 | 3 |
| 665 | 144.65 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 2 | 16 |
| 668 | 144.66 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 713 | 145.01 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 760 | 145.58 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 797 | 145.83 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 2 | 3 |
| 805 | 145.91 | humidity | 80.0 | 10 | > th | dose independent | rect. | 2 | 4 |
| 952 | 147.23 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 4 |
| 962 | 147.30 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 14 |
| 972 | 147.35 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 994 | 147.56 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 2 |