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Os09g0400500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Serine/threonine protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.57 (0.0317) R2 : 0.375
β1 : 0.882 (0.117) R2dD : 0.0727 R2D : 0.0536
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.64 (0.129) R2dE : 0.256 R2E : 0.255
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.268 (0.0696) R2dN8 : 0.0302 R2N8 : 0.0755
σ : 0.589
deviance : 159.79
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.452
memory length : 2581
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.34 0.584 8.61 0.704 0.716 1.9 -1.3 2.51 -0.393 8.08 0.6915 1405 -- --
156.67 0.583 8.6 0.897 0.687 1.26 -1.08 -- -0.394 8.13 1.78 1389 -- --
158.49 0.586 8.61 0.655 0.785 1.93 -- 2.76 -0.396 8.47 0.5 1423 -- --
160.29 0.59 8.6 0.859 0.731 1.25 -- -- -0.39 8.33 1.504 1396 -- --
171.64 0.61 8.6 0.848 -- 2.12 -- 1.62 -0.33 -- 0.2735 2557 -- --
177.06 0.624 8.6 0.615 0.835 -- -0.905 -- -0.523 8.63 -- -- -- --
179.64 0.628 8.6 0.587 0.835 -- -- -- -0.522 8.81 -- -- -- --
159.79 0.589 8.57 0.882 -- 1.64 -- -- -0.268 -- 2.452 2581 -- --
177.24 0.62 8.6 -- 0.677 0.943 -- -- -0.413 7.92 4.842 1355 -- --
219.25 0.692 8.63 0.588 -- -- -- -- -0.515 -- -- -- -- --
188.73 0.643 8.62 -- 0.836 -- -- -- -0.587 8.76 -- -- -- --
175.94 0.618 8.6 -- -- 1.52 -- -- -0.381 -- 3.241 2538 -- --
228.38 0.705 8.64 -- -- -- -- -- -0.581 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.56 temperature 30 90 < th dose dependent rect. 5 8
5 145.08 temperature 30 270 < th dose dependent rect. 3 9
6 146.20 temperature 30 10 < th dose dependent rect. 6 7
41 150.83 temperature 30 270 < th dose dependent sin 4 NA
47 151.23 temperature 30 90 < th dose dependent rect. 5 18
48 151.32 radiation 30 1440 < th dose dependent rect. 18 4
55 151.75 temperature 25 270 < th dose dependent sin 1 NA
58 151.89 temperature 30 90 < th dose dependent rect. 5 16
61 152.00 radiation 30 1440 < th dose dependent rect. 18 6
77 152.47 temperature 30 90 < th dose dependent rect. 17 20
85 152.60 temperature 30 90 < th dose dependent rect. 19 17
119 153.51 radiation 1 1440 < th dose dependent rect. 17 5
121 153.52 radiation 1 1440 < th dose dependent rect. 17 7
126 153.54 radiation 1 1440 < th dose dependent rect. 8 14
127 153.54 radiation 1 1440 < th dose dependent rect. 8 16
137 153.62 radiation 1 1440 < th dose dependent rect. 8 11
138 153.63 radiation 1 1440 < th dose dependent rect. 17 2
166 154.09 temperature 30 90 < th dose dependent rect. 5 21
167 154.13 radiation 1 1440 < th dose dependent sin 16 NA
176 154.17 temperature 25 270 < th dose independent rect. 4 8
186 154.27 radiation 1 1440 < th dose dependent rect. 15 7
187 154.27 radiation 1 1440 < th dose dependent rect. 15 9
189 154.27 wind 9 43200 > th dose dependent rect. 11 16
193 154.29 wind 9 43200 > th dose independent rect. 10 9
203 154.35 radiation 1 1440 < th dose dependent rect. 15 4
213 154.39 wind 9 43200 < th dose independent rect. 15 4
216 154.41 wind 9 43200 > th dose independent rect. 10 13
217 154.41 wind 9 43200 > th dose dependent rect. 12 12
224 154.43 wind 7 43200 > th dose dependent rect. 15 3
234 154.48 wind 9 43200 > th dose independent sin 18 NA
255 154.58 wind 9 43200 < th dose independent rect. 10 9
266 154.64 wind 9 43200 > th dose independent rect. 15 5
278 154.68 wind 9 43200 < th dose independent rect. 10 13
289 154.72 wind 9 43200 < th dose independent sin 18 NA
291 154.72 wind 9 43200 > th dose independent rect. 14 10
313 154.82 wind 9 43200 < th dose independent rect. 14 10
328 154.84 wind 9 43200 > th dose independent rect. 14 12
329 154.84 temperature 25 90 < th dose independent rect. 5 16
338 154.87 wind 9 43200 < th dose independent rect. 10 16
351 154.91 temperature 25 90 < th dose independent rect. 5 18
352 154.91 temperature 25 270 < th dose dependent rect. 7 2
369 154.96 radiation 1 43200 > th dose independent rect. 17 2
383 154.96 radiation 1 720 < th dose dependent rect. 19 22
384 154.97 radiation 1 1440 < th dose independent rect. 8 16
387 154.98 wind 7 43200 > th dose independent rect. 17 1
388 154.98 radiation 1 1440 < th dose independent rect. 8 14
400 155.00 radiation 1 43200 < th dose dependent rect. 17 1
401 155.01 radiation 1 1440 > th dose independent rect. 8 11
402 155.01 wind 9 43200 < th dose independent rect. 14 12
414 155.02 wind 9 43200 > th dose independent rect. 11 20
418 155.03 radiation 1 1440 < th dose independent rect. 8 11
433 155.07 radiation 1 43200 < th dose independent rect. 17 7
437 155.08 radiation 1 43200 < th dose independent rect. 17 2
466 155.11 wind 9 43200 > th dose independent rect. 12 15
510 155.20 radiation 1 43200 < th dose dependent rect. 16 5
558 155.26 humidity 90 43200 > th dose dependent rect. 5 1
606 155.31 wind 5 43200 > th dose independent rect. 19 3
628 155.32 wind 9 43200 < th dose independent rect. 11 20
647 155.37 radiation 1 43200 < th dose independent sin 16 NA
654 155.39 radiation 1 43200 > th dose independent sin 16 NA
656 155.39 humidity 90 43200 > th dose independent rect. 4 3
663 155.41 humidity 90 43200 > th dose independent rect. 5 1
667 155.41 radiation 1 43200 < th dose dependent sin 15 NA
670 155.42 wind 9 43200 < th dose independent rect. 16 1
697 155.46 radiation 1 43200 > th dose independent rect. 7 22
698 155.46 radiation 1 43200 < th dose independent rect. 7 22
703 155.47 radiation 1 43200 < th dose independent rect. 7 14
717 155.48 radiation 1 43200 > th dose independent rect. 7 12
718 155.48 radiation 1 43200 < th dose independent rect. 7 12
723 155.48 radiation 1 43200 > th dose independent rect. 17 15
797 155.51 radiation 1 43200 < th dose independent rect. 17 15
827 155.52 radiation 1 43200 > th dose independent rect. 17 19
832 155.52 wind 7 43200 > th dose dependent rect. 15 7
897 155.56 radiation 1 43200 < th dose dependent rect. 11 18
956 155.60 humidity 90 43200 > th dose dependent rect. 4 8
957 155.60 radiation 1 720 < th dose dependent rect. 4 14
966 155.61 radiation 1 43200 < th dose dependent rect. 11 8
986 155.62 radiation 1 43200 < th dose dependent rect. 9 12
996 155.63 wind 5 43200 < th dose independent rect. 19 3