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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0400400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.055) R2 : 0.334
β1 : 0.497 (0.272) R2dD : 0.0111 R2D : 0.0417
β2 : 0.0481 (0.131) R2dC : 0.000199 R2C : -0.0105
β3 : 2.91 (0.249) R2dE : 0.35 R2E : -0.0574
β4 : 3.07 (0.597) R2dD*C : 0.0389 R2D*C : 0.0201
β5 : 6.77 (0.86) R2dD*E : 0.277 R2D*E : -0.0354
γ1 : -0.0274 (0.122) R2dN8 : 0.000128 R2N8 : -0.00616
σ : 0.948
deviance : 406.84
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C
peak time of C : 17.2
E
wheather : radiation
threshold : 1.028
memory length : 11700
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
406.84 0.948 3.41 0.497 0.0481 2.91 3.07 6.77 -0.0274 17.2 1.028 11700 -- --
489.52 1.03 3.35 0.946 0.11 2.44 3.72 -- 0.119 16 2.14 8885 -- --
428.24 0.964 3.41 0.514 0.0175 2.94 -- 6.75 -0.0246 17.2 0.93 11658 -- --
480.74 1.02 3.24 1.61 0.108 2.27 -- -- 0.261 16 1.65 8862 -- --
428.23 0.964 3.41 0.509 -- 2.95 -- 6.82 -0.0221 -- 0.9272 11658 -- --
532.31 1.08 3.35 1.35 0.0234 -- -2.86 -- -0.253 5.79 -- -- -- --
548.92 1.1 3.35 1.32 0.234 -- -- -- -0.245 23.9 -- -- -- --
447.23 0.985 3.18 1.82 -- 2.05 -- -- 0.258 -- 1.53 27654 -- --
531.77 1.07 3.21 -- 0.133 2.04 -- -- 0.204 16 2.33 7418 -- --
552.38 1.1 3.35 1.33 -- -- -- -- -0.242 -- -- -- -- --
594.96 1.14 3.39 -- 0.252 -- -- -- -0.392 0.172 -- -- -- --
530.12 1.07 3.28 -- -- 1.85 -- -- 0.0613 -- 2.31 7381 -- --
598.95 1.14 3.38 -- -- -- -- -- -0.389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.80 radiation 1 4320 < th dose independent rect. 12 6
2 406.17 radiation 1 4320 < th dose independent rect. 9 9
7 406.64 radiation 1 1440 < th dose independent rect. 11 19
13 408.01 radiation 1 43200 < th dose dependent rect. 16 2
14 408.12 humidity 90 43200 > th dose dependent rect. 20 4
15 408.25 radiation 1 43200 < th dose independent rect. 8 19
18 408.26 radiation 1 43200 < th dose independent rect. 8 15
22 408.27 humidity 90 43200 > th dose dependent rect. 20 1
23 408.28 radiation 1 43200 < th dose independent rect. 8 11
42 408.51 radiation 1 4320 > th dose independent rect. 12 6
45 408.62 radiation 1 4320 < th dose independent rect. 12 12
46 408.62 radiation 1 4320 < th dose independent rect. 12 16
48 408.65 radiation 1 4320 > th dose independent rect. 9 9
64 408.83 radiation 1 4320 < th dose independent rect. 9 15
66 408.84 radiation 1 43200 > th dose independent rect. 7 11
81 408.95 radiation 1 43200 < th dose independent sin 19 NA
156 409.24 radiation 1 1440 < th dose dependent rect. 9 21
164 409.32 radiation 1 43200 < th dose independent rect. 13 14
168 409.33 radiation 1 43200 < th dose independent rect. 13 11
186 409.36 radiation 1 43200 < th dose independent rect. 13 6
202 409.42 radiation 1 43200 < th dose independent rect. 16 2
244 409.72 radiation 1 43200 < th dose dependent rect. 15 8
255 409.78 radiation 1 43200 < th dose dependent rect. 15 12
288 409.86 radiation 1 43200 < th dose dependent rect. 8 15
289 409.87 radiation 1 43200 < th dose dependent rect. 8 11
298 409.90 radiation 1 43200 > th dose independent rect. 16 1
301 409.91 radiation 1 43200 > th dose independent sin 19 NA
303 409.91 radiation 1 43200 < th dose dependent rect. 8 19
307 409.93 humidity 90 43200 < th dose independent rect. 14 8
308 409.93 humidity 80 43200 > th dose dependent sin 17 NA
310 409.93 humidity 80 43200 > th dose dependent rect. 11 15
314 409.96 radiation 1 43200 < th dose dependent sin 19 NA
327 410.02 humidity 80 43200 > th dose dependent rect. 10 17
383 410.15 humidity 80 43200 > th dose dependent rect. 12 13
452 410.29 radiation 1 43200 > th dose independent rect. 15 4
472 410.34 radiation 1 4320 < th dose independent sin 18 NA
473 410.34 humidity 90 43200 < th dose independent rect. 10 12
492 410.38 humidity 90 43200 > th dose independent rect. 18 1
498 410.43 humidity 90 43200 < th dose independent rect. 18 1
509 410.44 humidity 90 43200 < th dose independent rect. 21 1
553 410.70 humidity 80 43200 < th dose independent rect. 11 7
576 410.73 humidity 90 43200 < th dose independent sin 16 NA
588 410.81 radiation 1 43200 < th dose dependent rect. 14 21
597 410.86 radiation 1 43200 < th dose dependent rect. 12 23
607 410.89 humidity 90 43200 < th dose independent rect. 14 11
608 410.90 humidity 90 43200 < th dose independent rect. 13 14
647 410.97 radiation 1 43200 < th dose dependent rect. 2 17
648 410.97 radiation 1 43200 < th dose dependent rect. 2 21
689 411.00 humidity 90 43200 > th dose independent rect. 18 4
690 411.00 humidity 90 43200 < th dose independent rect. 10 19
702 411.02 radiation 1 43200 < th dose dependent no NA NA
786 411.14 radiation 1 4320 < th dose dependent rect. 12 6
796 411.16 radiation 1 43200 < th dose independent rect. 12 23
820 411.21 radiation 1 1440 > th dose independent rect. 10 20
851 411.25 humidity 80 43200 < th dose independent rect. 15 2
866 411.27 humidity 90 43200 < th dose independent rect. 17 10
908 411.36 radiation 1 43200 < th dose independent rect. 15 23
932 411.41 radiation 1 43200 < th dose independent no NA NA
933 411.41 humidity 80 43200 > th dose independent rect. 11 8
936 411.41 radiation 1 43200 < th dose independent rect. 2 21
939 411.41 radiation 1 43200 < th dose independent rect. 21 22
946 411.42 radiation 1 43200 < th dose independent rect. 2 17
956 411.42 radiation 1 43200 < th dose independent rect. 23 20