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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0399800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0698) R2 : 0.181
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.19 (0.167) R2dC : 0.0888 R2C : 0.0524
β3 : -1.85 (0.233) R2dE : 0.136 R2E : 0.0441
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.662 (0.156) R2dN8 : 0.0466 R2N8 : -0.0181
σ : 1.29
deviance : 762.64
__
_____
C
peak time of C : 1.88
E
wheather : radiation
threshold : 10.01
memory length : 1413
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
743.15 1.28 3.2 0.828 1.07 -1.96 -0.926 3.01 0.879 2.26 10 1441 -- --
757.88 1.28 3.29 0.324 1.19 -1.87 -0.781 -- 0.667 2 10.5 1407 -- --
746.06 1.27 3.2 0.852 1.07 -1.98 -- 2.94 0.889 2.02 10 1440 -- --
759.05 1.28 3.27 0.409 1.16 -1.9 -- -- 0.685 1.91 10.01 1414 -- --
779.35 1.3 3.2 0.879 -- -2.55 -- 3.37 0.898 -- 10 1630 -- --
859.88 1.37 3.41 -0.256 1.03 -- -1.28 -- 0.12 2.37 -- -- -- --
865.39 1.38 3.41 -0.221 1.02 -- -- -- 0.129 2.03 -- -- -- --
789.6 1.31 3.27 0.389 -- -2.53 -- -- 0.733 -- 10.19 1700 -- --
762.64 1.29 3.28 -- 1.19 -1.85 -- -- 0.662 1.88 10.01 1413 -- --
927.92 1.42 3.4 -0.178 -- -- -- -- 0.153 -- -- -- -- --
866.67 1.38 3.4 -- 1.02 -- -- -- 0.154 2.02 -- -- -- --
792.56 1.31 3.26 -- -- -2.49 -- -- 0.703 -- 10 1700 -- --
928.75 1.42 3.39 -- -- -- -- -- 0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 733.04 temperature 20 43200 < th dose independent rect. 11 1
3 733.43 temperature 20 43200 > th dose independent rect. 11 1
6 733.86 temperature 20 43200 > th dose independent rect. 10 3
17 735.24 temperature 20 43200 < th dose independent rect. 7 8
27 735.96 temperature 20 43200 > th dose independent rect. 7 8
40 736.67 temperature 20 43200 < th dose independent rect. 7 1
50 737.27 temperature 20 43200 > th dose independent rect. 7 1
67 739.12 temperature 20 43200 < th dose dependent rect. 6 2
72 739.48 radiation 10 1440 > th dose independent rect. 8 23
86 740.07 radiation 10 1440 > th dose independent rect. 17 22
91 740.21 radiation 1 43200 < th dose dependent rect. 6 11
97 740.46 temperature 20 43200 < th dose dependent rect. 6 5
100 740.61 radiation 40 43200 < th dose dependent rect. 19 10
112 740.95 radiation 10 1440 > th dose independent rect. 6 9
128 741.13 radiation 10 1440 > th dose independent rect. 8 7
131 741.16 radiation 1 43200 > th dose independent rect. 8 8
135 741.31 radiation 10 1440 > th dose independent sin 0 NA
136 741.32 radiation 1 43200 < th dose independent rect. 8 8
141 741.39 radiation 10 1440 > th dose independent rect. 8 9
146 741.61 radiation 10 43200 < th dose dependent rect. 24 5
162 741.66 wind 7 720 < th dose independent sin 15 NA
165 741.92 wind 1 43200 > th dose independent rect. 16 3
174 742.13 radiation 10 43200 < th dose dependent rect. 4 1
220 742.70 wind 9 43200 > th dose dependent rect. 14 3
223 742.72 radiation 1 43200 < th dose dependent rect. 6 1
230 742.88 wind 1 43200 < th dose independent rect. 16 3
231 742.92 radiation 10 1440 > th dose independent rect. 11 23
247 743.15 radiation 10 1440 > th dose independent no NA NA
326 743.16 radiation 1 43200 > th dose independent rect. 9 1
333 743.27 wind 7 720 < th dose independent rect. 15 8
339 743.43 radiation 1 43200 < th dose independent rect. 9 1
341 743.45 radiation 10 1440 < th dose dependent rect. 8 10
355 743.67 radiation 1 43200 > th dose independent rect. 8 6
367 743.88 radiation 1 43200 < th dose independent rect. 8 6
368 743.92 radiation 1 43200 < th dose dependent rect. 6 4
385 744.10 temperature 20 43200 < th dose dependent sin 3 NA
416 744.30 radiation 1 43200 > th dose independent rect. 9 4
445 744.59 radiation 1 43200 < th dose independent rect. 9 4
464 744.79 radiation 10 1440 < th dose dependent rect. 8 16
472 744.85 radiation 10 1440 < th dose dependent rect. 8 20
556 745.43 temperature 20 43200 < th dose dependent rect. 19 17
576 745.52 radiation 10 1440 > th dose independent rect. 14 23
612 745.67 temperature 20 43200 < th dose independent sin 0 NA
651 745.82 temperature 20 43200 < th dose dependent no NA NA
662 745.89 wind 7 270 > th dose dependent rect. 22 10
667 745.90 temperature 20 43200 < th dose dependent rect. 9 23
697 745.99 wind 7 270 > th dose dependent rect. 22 7
729 746.19 wind 9 43200 > th dose independent rect. 14 3
772 746.58 wind 9 43200 > th dose independent rect. 11 7
788 746.68 wind 5 720 > th dose independent rect. 21 2
801 746.80 temperature 20 43200 < th dose dependent rect. 2 1
802 746.81 wind 7 720 < th dose independent rect. 13 16
803 746.84 temperature 20 43200 > th dose independent sin 0 NA
810 746.95 temperature 20 43200 < th dose dependent rect. 10 1
855 747.31 wind 7 720 < th dose independent rect. 15 16
886 747.56 temperature 20 43200 > th dose independent rect. 4 1
896 747.65 temperature 20 43200 < th dose independent rect. 4 1
951 748.15 wind 9 43200 < th dose independent rect. 11 7
989 748.48 radiation 30 43200 < th dose independent rect. 24 7
995 748.56 wind 3 720 > th dose dependent rect. 21 2