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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0398300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0161) R2 : 0.00158
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0287 (0.0338) R2dN8 : 0.00203 R2N8 : 0.00158
σ : 0.303
deviance : 42.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.58 0.299 2.98 0.155 0.135 -0.147 -1.17 1.11 0.0613 11.6 0.39 96 -- --
41.41 0.302 2.99 0.084 0.103 -0.0963 0.0225 -- 0.037 9.31 0.39 96 -- --
41.25 0.301 2.99 0.0872 0.106 -0.0988 -- 0.158 0.0377 9.31 0.39 96 -- --
41.37 0.3 2.99 0.0821 0.107 -0.108 -- -- 0.0398 10.1 0.05907 69 -- --
41.45 0.3 2.99 0.0885 -- -0.0539 -- 0.177 0.0455 -- 0.13 119 -- --
41.6 0.302 2.99 0.0769 0.0672 -- -0.109 -- 0.0353 3.84 -- -- -- --
41.63 0.302 2.99 0.0784 0.0666 -- -- -- 0.0359 3.86 -- -- -- --
41.6 0.3 2.99 0.0877 -- -0.0515 -- -- 0.0442 -- 0.04529 124 -- --
41.58 0.3 2.99 -- 0.107 -0.108 -- -- 0.0395 10.1 0.04641 79 -- --
41.88 0.302 2.99 0.0812 -- -- -- -- 0.0377 -- -- -- -- --
41.79 0.302 2.99 -- 0.0681 -- -- -- 0.0272 3.84 -- -- -- --
41.79 0.301 2.99 -- -- -0.0532 -- -- 0.0338 -- 0.003677 126 -- --
42.05 0.303 2.99 -- -- -- -- -- 0.0287 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.79 wind 1.0 30 < th dose independent rect. 2 1
2 36.80 wind 3.0 30 < th dose dependent rect. 2 1
7 36.84 humidity 80.0 30 > th dose independent rect. 2 1
8 36.84 atmosphere 1015.0 30 < th dose dependent rect. 2 1
12 36.85 temperature 10.0 30 > th dose independent rect. 2 1
14 36.85 temperature 25.0 30 < th dose independent rect. 2 1
16 36.85 humidity 50.0 30 > th dose independent rect. 2 1
19 36.85 atmosphere 995.0 30 > th dose independent rect. 2 1
20 36.85 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 36.85 radiation 1.0 30 < th dose independent rect. 2 1
27 36.85 precipitation 0.1 30 < th dose independent rect. 2 1
28 36.85 temperature 10.0 30 > th dose independent rect. 3 23
29 36.85 temperature 10.0 30 > th dose dependent rect. 2 1
31 36.85 humidity 50.0 30 > th dose dependent rect. 2 1
35 36.85 atmosphere 1005.0 30 > th dose dependent rect. 2 1
36 36.85 radiation 1.0 30 < th dose dependent rect. 2 1
41 36.85 precipitation 0.1 30 < th dose dependent rect. 2 1
45 36.89 atmosphere 995.0 30 > th dose dependent rect. 2 1
48 36.90 temperature 30.0 30 < th dose dependent rect. 2 1
50 36.91 atmosphere 1005.0 30 > th dose independent rect. 2 1
95 37.14 wind 1.0 30 > th dose independent rect. 2 1
99 37.19 wind 9.0 30 < th dose independent rect. 3 23
110 38.50 atmosphere 995.0 30 > th dose independent rect. 3 23
112 38.57 temperature 25.0 90 > th dose independent rect. 1 3
116 38.71 atmosphere 1005.0 10 > th dose dependent rect. 2 3
117 38.72 temperature 25.0 90 > th dose dependent rect. 1 4
118 38.73 temperature 25.0 270 > th dose independent rect. 1 1
123 38.83 precipitation 0.1 30 < th dose independent rect. 3 23
126 38.83 precipitation 0.1 30 < th dose dependent rect. 3 23
153 39.25 temperature 10.0 720 > th dose independent rect. 15 8
154 39.25 atmosphere 1015.0 720 < th dose independent rect. 3 8
155 39.25 temperature 10.0 720 > th dose independent rect. 23 16
157 39.27 wind 9.0 720 < th dose independent rect. 3 8
159 39.28 temperature 10.0 720 > th dose independent rect. 3 8
160 39.28 atmosphere 995.0 720 > th dose independent rect. 3 8
161 39.28 temperature 10.0 720 > th dose independent rect. 11 16
164 39.33 humidity 50.0 30 > th dose independent rect. 3 23
168 39.40 radiation 40.0 720 < th dose independent rect. 15 8
171 39.41 radiation 1.0 43200 < th dose dependent rect. 3 1
173 39.43 wind 9.0 4320 < th dose independent rect. 3 1
174 39.44 precipitation 0.1 720 < th dose independent rect. 15 8
175 39.44 precipitation 0.1 720 < th dose dependent rect. 15 8
177 39.45 temperature 10.0 1440 > th dose independent rect. 3 1
180 39.45 temperature 30.0 1440 < th dose independent rect. 3 1
184 39.45 humidity 50.0 1440 > th dose independent rect. 3 1
193 39.45 atmosphere 995.0 1440 > th dose independent rect. 3 1
194 39.45 radiation 1.0 1440 < th dose independent rect. 3 1
216 39.45 temperature 10.0 1440 > th dose independent rect. 4 23
219 39.45 radiation 1.0 1440 < th dose dependent rect. 3 1
239 39.46 humidity 50.0 720 > th dose independent rect. 3 8
242 39.48 temperature 25.0 270 > th dose independent rect. 22 5
243 39.48 atmosphere 995.0 720 > th dose independent rect. 23 16
274 39.67 precipitation 0.1 720 < th dose independent rect. 11 16
277 39.67 precipitation 0.1 720 < th dose dependent rect. 11 16
280 39.70 humidity 90.0 90 < th dose independent rect. 2 1
282 39.70 precipitation 0.1 720 < th dose independent rect. 3 8
284 39.70 precipitation 0.1 720 < th dose dependent rect. 3 8
291 39.72 wind 9.0 720 < th dose independent rect. 15 8
322 39.75 atmosphere 1015.0 30 < th dose independent rect. 3 23
324 39.76 precipitation 0.1 720 < th dose independent rect. 23 16
327 39.76 precipitation 0.1 720 < th dose dependent rect. 23 16
329 39.79 atmosphere 1015.0 1440 < th dose independent rect. 3 1
338 39.83 humidity 90.0 10 < th dose independent rect. 4 1
344 39.86 atmosphere 995.0 720 > th dose independent rect. 15 8
345 39.86 atmosphere 995.0 720 > th dose independent rect. 11 16
353 39.90 wind 1.0 30 > th dose dependent rect. 2 1
362 39.94 atmosphere 1005.0 30 > th dose independent rect. 2 3
366 39.95 wind 1.0 30 > th dose independent rect. 4 1
376 39.97 wind 9.0 30 < th dose dependent rect. 3 23
387 40.02 wind 9.0 720 < th dose independent rect. 23 16
390 40.03 wind 1.0 30 > th dose dependent rect. 4 1
398 40.06 atmosphere 1005.0 10 > th dose dependent rect. 4 1
402 40.08 temperature 25.0 10 > th dose independent rect. 4 1
423 40.09 humidity 90.0 90 < th dose independent rect. 1 4
426 40.09 wind 9.0 720 < th dose independent rect. 11 16
427 40.09 atmosphere 1000.0 30 > th dose independent rect. 5 21
430 40.09 temperature 25.0 30 > th dose dependent rect. 4 1
457 40.15 atmosphere 1000.0 30 > th dose independent rect. 23 23
467 40.16 temperature 25.0 270 > th dose dependent rect. 22 6
476 40.18 wind 1.0 10 > th dose independent rect. 23 23
501 40.24 temperature 10.0 30 > th dose dependent rect. 3 23
505 40.25 radiation 10.0 43200 < th dose dependent rect. 23 1
514 40.26 radiation 1.0 10 < th dose independent rect. 2 12
518 40.26 radiation 1.0 10 < th dose dependent rect. 2 12
522 40.26 temperature 10.0 30 > th dose dependent rect. 5 21
526 40.27 radiation 10.0 10 < th dose independent rect. 5 21
531 40.28 wind 1.0 720 > th dose independent rect. 15 8
532 40.28 wind 9.0 30 < th dose independent rect. 5 21
534 40.28 precipitation 0.1 30 < th dose independent rect. 5 21
542 40.28 precipitation 0.1 30 < th dose dependent rect. 5 21
543 40.29 temperature 25.0 720 > th dose independent rect. 6 1
566 40.29 temperature 10.0 30 > th dose independent rect. 5 21
568 40.29 radiation 10.0 10 < th dose independent rect. 3 23
583 40.30 atmosphere 1000.0 10 > th dose independent rect. 16 10
610 40.31 wind 1.0 10 < th dose independent rect. 15 12
623 40.31 radiation 1.0 30 < th dose dependent rect. 2 10
629 40.32 precipitation 0.1 1440 < th dose independent rect. 23 1
631 40.32 radiation 1.0 10 < th dose independent rect. 2 6
635 40.32 wind 1.0 10 < th dose independent rect. 17 10
639 40.32 humidity 50.0 30 > th dose independent rect. 5 21
640 40.32 precipitation 0.1 1440 < th dose dependent rect. 23 1
643 40.32 temperature 25.0 720 > th dose dependent rect. 5 3
667 40.33 radiation 1.0 4320 < th dose dependent rect. 23 1
672 40.34 wind 9.0 1440 < th dose independent rect. 3 3
673 40.34 temperature 10.0 1440 > th dose independent rect. 3 3
676 40.34 temperature 30.0 1440 < th dose independent rect. 3 3
680 40.34 humidity 50.0 1440 > th dose independent rect. 3 3
689 40.34 atmosphere 995.0 1440 > th dose independent rect. 3 3
690 40.34 radiation 20.0 1440 < th dose independent rect. 3 3
709 40.34 temperature 10.0 1440 > th dose independent rect. 6 21
718 40.35 wind 9.0 1440 < th dose independent rect. 23 1
719 40.35 temperature 25.0 10 > th dose independent rect. 22 1
721 40.35 temperature 10.0 1440 > th dose independent rect. 23 1
724 40.35 temperature 30.0 1440 < th dose independent rect. 23 1
728 40.35 humidity 50.0 1440 > th dose independent rect. 23 1
738 40.35 atmosphere 995.0 1440 > th dose independent rect. 23 1
739 40.35 radiation 1.0 1440 < th dose independent rect. 23 1
762 40.35 temperature 10.0 1440 > th dose independent rect. 24 23
765 40.35 temperature 25.0 10 > th dose dependent rect. 22 1
784 40.36 wind 3.0 30 < th dose independent rect. 22 1
785 40.36 humidity 80.0 30 > th dose independent rect. 22 1
794 40.36 atmosphere 1005.0 30 > th dose dependent rect. 22 1
798 40.37 wind 1.0 30 > th dose independent rect. 22 1
800 40.37 humidity 90.0 30 < th dose independent rect. 22 1
801 40.37 atmosphere 1005.0 30 > th dose independent rect. 22 1
805 40.37 wind 5.0 30 < th dose dependent rect. 22 1
807 40.37 temperature 10.0 30 > th dose dependent rect. 22 1
814 40.37 temperature 20.0 30 > th dose dependent rect. 22 7
818 40.38 temperature 10.0 30 > th dose independent rect. 22 1
820 40.38 temperature 30.0 30 < th dose independent rect. 22 1
821 40.38 humidity 50.0 30 > th dose independent rect. 22 1
824 40.38 atmosphere 995.0 30 > th dose independent rect. 22 1
826 40.38 atmosphere 1010.0 30 < th dose independent rect. 22 1
828 40.38 radiation 1.0 30 < th dose independent rect. 22 1
833 40.38 precipitation 0.1 30 < th dose independent rect. 22 1
835 40.38 temperature 25.0 270 < th dose independent rect. 19 11
836 40.38 wind 9.0 30 < th dose independent rect. 23 23
837 40.38 temperature 10.0 30 > th dose independent rect. 23 23
841 40.38 humidity 50.0 30 > th dose dependent rect. 22 1
848 40.38 radiation 1.0 30 < th dose dependent rect. 22 1
853 40.38 precipitation 0.1 30 < th dose dependent rect. 22 1
859 40.39 radiation 40.0 10 < th dose independent rect. 3 23
860 40.39 precipitation 0.1 30 < th dose independent rect. 23 23
862 40.39 humidity 90.0 30 < th dose dependent rect. 22 1
865 40.39 atmosphere 1015.0 30 < th dose dependent rect. 22 1
867 40.39 precipitation 0.1 30 < th dose dependent rect. 23 23
872 40.40 radiation 10.0 10 < th dose independent rect. 14 12
879 40.40 radiation 1.0 90 < th dose dependent rect. 1 23
880 40.40 radiation 40.0 10 < th dose dependent rect. 3 23
889 40.41 wind 1.0 30 > th dose dependent rect. 22 1
891 40.41 temperature 30.0 30 < th dose dependent rect. 22 1
894 40.42 wind 5.0 10 < th dose independent rect. 4 1
899 40.42 atmosphere 1000.0 10 > th dose independent rect. 14 12
918 40.43 temperature 30.0 30 < th dose independent rect. 3 23
920 40.43 wind 9.0 720 < th dose dependent rect. 2 1
930 40.44 temperature 10.0 10 > th dose independent rect. 4 1
934 40.44 temperature 30.0 10 < th dose independent rect. 4 1
936 40.44 humidity 50.0 10 > th dose independent rect. 4 1
942 40.44 atmosphere 995.0 10 > th dose independent rect. 4 1
944 40.44 atmosphere 1010.0 10 < th dose independent rect. 4 1
948 40.44 radiation 1.0 10 < th dose independent rect. 4 1
963 40.44 temperature 10.0 10 > th dose independent rect. 5 23
965 40.44 temperature 30.0 10 < th dose dependent rect. 4 1
968 40.44 radiation 10.0 10 < th dose dependent rect. 4 1
987 40.45 humidity 50.0 30 > th dose independent rect. 23 23