Os09g0398200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0398200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.87 | 0.425 | 7.99 | 0.101 | 0.124 | -1.24 | 0.485 | 1.89 | 0.0337 | 20.1 | 24.67 | 845 | -- | -- |
| 86.01 | 0.432 | 7.93 | 0.469 | 0.149 | -1.33 | -0.0983 | -- | 0.158 | 21.1 | 23.8 | 858 | -- | -- |
| 82.4 | 0.423 | 7.99 | 0.0708 | 0.126 | -1.26 | -- | 1.83 | 0.0386 | 20.5 | 24.65 | 874 | -- | -- |
| 85.64 | 0.431 | 7.94 | 0.414 | 0.135 | -1.46 | -- | -- | 0.115 | 22 | 23.75 | 855 | -- | -- |
| 83.35 | 0.425 | 7.98 | 0.0691 | -- | -1.28 | -- | 1.81 | 0.0233 | -- | 24.86 | 857 | -- | -- |
| 114.47 | 0.502 | 7.89 | 0.8 | 0.301 | -- | -0.325 | -- | 0.384 | 23 | -- | -- | -- | -- |
| 114.87 | 0.502 | 7.89 | 0.814 | 0.306 | -- | -- | -- | 0.386 | 22.6 | -- | -- | -- | -- |
| 86.72 | 0.434 | 7.94 | 0.393 | -- | -1.52 | -- | -- | 0.104 | -- | 23.83 | 834 | -- | -- |
| 89.49 | 0.441 | 7.96 | -- | 0.149 | -1.67 | -- | -- | 0.0633 | 21.9 | 23.47 | 871 | -- | -- |
| 120.64 | 0.513 | 7.88 | 0.82 | -- | -- | -- | -- | 0.387 | -- | -- | -- | -- | -- |
| 132.33 | 0.538 | 7.91 | -- | 0.312 | -- | -- | -- | 0.295 | 22.8 | -- | -- | -- | -- |
| 90.26 | 0.442 | 7.96 | -- | -- | -1.71 | -- | -- | 0.0362 | -- | 23.74 | 853 | -- | -- |
| 138.37 | 0.549 | 7.9 | -- | -- | -- | -- | -- | 0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 3 | 81.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 4 | 82.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 10 | 82.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 20 | 82.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 23 | 82.41 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 26 | 82.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 29 | 82.48 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 38 | 82.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 48 | 82.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 51 | 82.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 57 | 82.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 62 | 82.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 79 | 82.98 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 88 | 83.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 102 | 83.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 111 | 83.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 114 | 83.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 124 | 83.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 129 | 83.53 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 130 | 83.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 139 | 83.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 145 | 83.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 161 | 83.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 209 | 84.40 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 211 | 84.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 256 | 84.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 265 | 84.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 271 | 84.91 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 278 | 84.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 327 | 85.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 328 | 85.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 342 | 85.18 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 385 | 85.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 392 | 85.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 399 | 85.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 473 | 85.75 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 509 | 85.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 546 | 85.93 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 609 | 86.12 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 22 |
| 627 | 86.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 750 | 86.39 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 22 |
| 985 | 86.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 1 |