Os09g0397700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutathione-dependent formaldehyde-activating, GFA family protein.
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Os09g0397700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutathione-dependent formaldehyde-activating, GFA family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.46 | 0.251 | 10.8 | -0.41 | 0.201 | -0.509 | -0.448 | 0.186 | -0.203 | 1.05 | 24.6 | 206 | -- | -- |
| 28.47 | 0.249 | 10.8 | -0.435 | 0.204 | -0.49 | -0.462 | -- | -0.21 | 1.13 | 24.6 | 206 | -- | -- |
| 29.18 | 0.252 | 10.8 | -0.358 | 0.214 | -0.502 | -- | 0.586 | -0.186 | 1.5 | 24.45 | 216 | -- | -- |
| 29.28 | 0.252 | 10.8 | -0.424 | 0.221 | -0.449 | -- | -- | -0.211 | 1.89 | 24.61 | 206 | -- | -- |
| 31.06 | 0.26 | 10.7 | -0.28 | -- | -0.686 | -- | 0.857 | -0.159 | -- | 24.6 | 143 | -- | -- |
| 32.3 | 0.266 | 10.8 | -0.509 | 0.395 | -- | -0.227 | -- | -0.255 | 2.96 | -- | -- | -- | -- |
| 32.46 | 0.267 | 10.8 | -0.504 | 0.397 | -- | -- | -- | -0.254 | 3.11 | -- | -- | -- | -- |
| 31.34 | 0.261 | 10.8 | -0.388 | -- | -0.617 | -- | -- | -0.187 | -- | 24.55 | 137 | -- | -- |
| 33.76 | 0.271 | 10.7 | -- | 0.192 | -0.538 | -- | -- | -0.139 | 1.2 | 23.5 | 226 | -- | -- |
| 41.43 | 0.301 | 10.8 | -0.487 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 39.14 | 0.293 | 10.8 | -- | 0.387 | -- | -- | -- | -0.198 | 3.11 | -- | -- | -- | -- |
| 35.29 | 0.277 | 10.7 | -- | -- | -0.671 | -- | -- | -0.126 | -- | 23.73 | 145 | -- | -- |
| 47.68 | 0.322 | 10.8 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 2 | 27.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 4 | 27.47 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 5 | 27.47 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 6 | 27.48 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 9 | 27.51 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 24 | 27.62 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 35 | 27.67 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 121 | 27.93 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 122 | 27.93 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 6 |
| 128 | 27.95 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 129 | 27.95 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 175 | 28.01 | temperature | 15.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 210 | 28.06 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 213 | 28.06 | temperature | 30.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 217 | 28.07 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 228 | 28.08 | temperature | 20.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 284 | 28.13 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 285 | 28.13 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 331 | 28.17 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 343 | 28.18 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 12 |
| 353 | 28.19 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 366 | 28.19 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 3 | 16 |
| 377 | 28.20 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 403 | 28.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 420 | 28.22 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 21 | NA |
| 455 | 28.24 | temperature | 25.0 | 270 | > th | dose independent | sin | 22 | NA |
| 605 | 28.31 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 618 | 28.32 | temperature | 20.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 679 | 28.33 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 741 | 28.36 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 743 | 28.36 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 745 | 28.36 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 907 | 28.43 | temperature | 25.0 | 720 | < th | dose independent | rect. | 8 | 3 |
| 924 | 28.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 14 |
| 931 | 28.44 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 973 | 28.46 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 6 |