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Os09g0397300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HAD-superfamily hydrolase subfamily IIB protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.95 (0.0393) R2 : 0.601
β1 : -1.26 (0.145) R2dD : 0.0706 R2D : 0.113
β2 : 1.79 (0.102) R2dC : 0.272 R2C : 0.276
β3 : 1.3 (0.13) R2dE : 0.0919 R2E : 0.0933
β4 : 3.77 (0.465) R2dD*C : 0.0598 R2D*C : 0.0652
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.671 (0.0851) R2dN8 : 0.0798 R2N8 : 0.0566
σ : 0.73
deviance : 245.64
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_____
C
peak time of C : 18.4
E
wheather : humidity
threshold : 75
memory length : 1275
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.56 0.733 9.98 -1.46 1.8 1.08 3.85 1.53 0.624 18.5 71.72 1259 -- --
245.64 0.73 9.95 -1.26 1.79 1.3 3.77 -- 0.671 18.4 75 1275 -- --
273.58 0.77 9.97 -1.56 1.83 1.16 -- 1.87 0.623 17.9 74 1378 -- --
280.14 0.78 9.95 -1.32 1.83 1.6 -- -- 0.651 17.9 75.29 1379 -- --
441.58 0.979 9.94 -1.65 -- 1.36 -- 2.05 0.606 -- 74.19 1323 -- --
295.89 0.806 9.98 -1.47 1.87 -- 3.76 -- 0.524 18 -- -- -- --
329.91 0.851 9.97 -1.5 1.9 -- -- -- 0.54 17.8 -- -- -- --
445.09 0.983 9.91 -1.38 -- 2.12 -- -- 0.646 -- 76.45 1325 -- --
324.53 0.839 9.91 -- 1.82 1.86 -- -- 0.844 18 76 1363 -- --
516.56 1.06 9.94 -1.55 -- -- -- -- 0.495 -- -- -- -- --
388.84 0.922 9.94 -- 1.92 -- -- -- 0.706 17.7 -- -- -- --
491.2 1.03 9.87 -- -- 2.17 -- -- 0.835 -- 75.55 1323 -- --
580.27 1.12 9.91 -- -- -- -- -- 0.667 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 235.83 humidity 80 1440 < th dose independent rect. 6 8
8 237.42 humidity 80 1440 > th dose independent rect. 6 8
28 239.42 humidity 80 1440 < th dose independent sin 4 NA
40 240.25 humidity 80 720 < th dose dependent rect. 20 1
42 240.37 humidity 70 1440 > th dose independent rect. 10 2
43 240.38 humidity 80 1440 > th dose independent sin 3 NA
55 240.83 humidity 70 1440 > th dose independent rect. 18 20
62 241.13 humidity 90 720 < th dose dependent rect. 19 4
63 241.15 humidity 90 720 < th dose dependent rect. 18 6
72 241.53 humidity 70 1440 < th dose independent rect. 10 2
89 242.33 temperature 25 720 > th dose dependent rect. 20 1
93 242.47 humidity 70 720 > th dose dependent rect. 19 6
97 242.57 humidity 70 1440 > th dose dependent rect. 6 9
99 242.70 humidity 70 1440 > th dose dependent rect. 9 5
142 243.51 humidity 60 1440 > th dose dependent rect. 11 1
143 243.52 humidity 70 14400 < th dose independent rect. 18 1
151 243.76 humidity 70 1440 < th dose independent rect. 18 20
162 244.08 humidity 60 1440 > th dose dependent rect. 18 21
227 245.30 humidity 80 1440 > th dose independent rect. 21 18
229 245.32 humidity 60 1440 > th dose dependent sin 3 NA
268 245.76 humidity 70 14400 < th dose independent rect. 18 14
270 245.78 humidity 90 1440 < th dose dependent rect. 18 20
271 245.79 humidity 80 1440 < th dose independent rect. 20 19
292 246.00 temperature 25 720 > th dose dependent rect. 19 4
295 246.03 humidity 60 1440 > th dose dependent rect. 10 3
300 246.07 humidity 70 14400 < th dose independent rect. 11 1
324 246.27 humidity 80 720 < th dose independent rect. 18 4
330 246.32 humidity 70 14400 > th dose independent rect. 18 2
341 246.36 humidity 60 1440 > th dose dependent rect. 6 22
349 246.39 humidity 60 1440 > th dose dependent rect. 22 23
361 246.45 humidity 70 14400 > th dose independent rect. 18 14
364 246.45 humidity 50 1440 > th dose dependent rect. 13 23
409 246.72 humidity 60 1440 > th dose dependent no NA NA
430 246.79 humidity 60 1440 > th dose dependent rect. 2 23
435 246.81 humidity 80 1440 > th dose independent rect. 6 16
466 246.95 wind 3 43200 < th dose dependent rect. 1 4
484 246.98 humidity 70 1440 > th dose independent rect. 9 12
486 246.99 humidity 70 1440 > th dose independent rect. 9 16
487 246.99 humidity 70 1440 > th dose independent rect. 9 18
509 247.02 humidity 60 1440 > th dose dependent rect. 9 23
560 247.16 humidity 80 1440 > th dose independent rect. 3 19
565 247.17 humidity 80 720 > th dose dependent rect. 21 2
576 247.20 humidity 70 14400 > th dose independent rect. 18 9
581 247.21 humidity 70 14400 > th dose independent rect. 18 7
598 247.26 humidity 80 1440 < th dose independent rect. 6 16
613 247.30 humidity 70 14400 < th dose independent sin 14 NA
615 247.31 humidity 70 14400 < th dose independent rect. 16 15
664 247.43 humidity 70 14400 < th dose independent rect. 11 21
668 247.45 humidity 80 720 < th dose dependent rect. 18 14
679 247.49 humidity 70 14400 > th dose independent rect. 11 1
704 247.57 humidity 70 14400 < th dose independent rect. 11 11
822 247.86 humidity 70 14400 > th dose independent sin 14 NA
827 247.88 humidity 70 14400 > th dose independent rect. 11 21
848 247.94 humidity 80 720 < th dose independent rect. 20 1
870 247.96 humidity 90 1440 < th dose dependent sin 5 NA
904 248.04 humidity 70 14400 > th dose independent rect. 11 13
915 248.05 humidity 70 14400 > th dose independent rect. 11 11
929 248.07 humidity 70 1440 > th dose independent rect. 13 23
966 248.15 humidity 70 1440 < th dose independent rect. 9 11