Os09g0395400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0395400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.11 | 0.589 | 7.46 | 1.25 | 1.57 | -0.999 | 1.38 | 1.84 | 0.0379 | 16.5 | 10 | 1335 | -- | -- |
| 162.42 | 0.594 | 7.51 | 0.978 | 1.55 | -0.923 | 1.19 | -- | -0.0816 | 16.4 | 10.01 | 1338 | -- | -- |
| 161.54 | 0.592 | 7.47 | 1.33 | 1.62 | -1.08 | -- | 2.12 | 0.0225 | 16.7 | 10 | 1268 | -- | -- |
| 166.46 | 0.601 | 7.5 | 0.981 | 1.56 | -0.955 | -- | -- | -0.0718 | 16.5 | 10 | 1338 | -- | -- |
| 295.51 | 0.801 | 7.45 | 1.36 | -- | -1.17 | -- | 2.29 | 0.0797 | -- | 10.3 | 1331 | -- | -- |
| 186.49 | 0.64 | 7.56 | 0.683 | 1.61 | -- | 1.3 | -- | -0.338 | 16.2 | -- | -- | -- | -- |
| 191.23 | 0.648 | 7.56 | 0.697 | 1.62 | -- | -- | -- | -0.331 | 16.1 | -- | -- | -- | -- |
| 296.5 | 0.802 | 7.45 | 0.997 | -- | -1.17 | -- | -- | -0.034 | -- | 10.01 | 1351 | -- | -- |
| 185.06 | 0.634 | 7.52 | -- | 1.59 | -1.06 | -- | -- | -0.176 | 16.7 | 8.193 | 1328 | -- | -- |
| 333.84 | 0.854 | 7.55 | 0.632 | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
| 204.05 | 0.668 | 7.57 | -- | 1.61 | -- | -- | -- | -0.409 | 16.1 | -- | -- | -- | -- |
| 309.02 | 0.821 | 7.56 | -- | -- | 0.594 | -- | -- | -0.421 | -- | 10.01 | 1351 | -- | -- |
| 344.37 | 0.866 | 7.56 | -- | -- | -- | -- | -- | -0.444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.14 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 2 | 156.82 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 6 | 157.13 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 28 | 157.89 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 60 | 158.53 | radiation | 10.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 70 | 159.06 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 73 | 159.09 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 74 | 159.09 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 79 | 159.17 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 98 | 159.39 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 102 | 159.56 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 191 | 160.25 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 263 | 160.50 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 299 | 160.93 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 12 |
| 304 | 160.95 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 309 | 161.02 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 333 | 161.25 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 337 | 161.27 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 380 | 161.57 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 403 | 161.79 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 415 | 161.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 489 | 162.42 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 491 | 162.49 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 4 |
| 518 | 162.82 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 530 | 163.01 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 536 | 163.09 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 585 | 163.34 | humidity | 50.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 608 | 163.47 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 618 | 163.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 627 | 163.56 | humidity | 90.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 658 | 163.73 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 671 | 163.80 | humidity | 80.0 | 720 | > th | dose independent | rect. | 15 | 12 |
| 672 | 163.83 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 695 | 163.92 | humidity | 80.0 | 720 | > th | dose independent | sin | 14 | NA |
| 718 | 164.06 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 8 |
| 722 | 164.07 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 750 | 164.17 | wind | 7.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 801 | 164.34 | humidity | 80.0 | 720 | > th | dose independent | rect. | 5 | 22 |
| 823 | 164.40 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 830 | 164.46 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 842 | 164.51 | wind | 7.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 852 | 164.58 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 860 | 164.62 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 15 |
| 861 | 164.63 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 895 | 164.77 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 916 | 164.89 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 6 |
| 917 | 164.89 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 923 | 164.93 | humidity | 80.0 | 720 | > th | dose independent | rect. | 14 | 18 |
| 924 | 164.93 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 958 | 165.00 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 2 |