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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0395300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CDPK substrate protein 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0193) R2 : 0.018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.118 (0.0407) R2dN8 : 0.0232 R2N8 : 0.018
σ : 0.364
deviance : 60.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.87 0.345 3.19 -0.325 0.186 4.04 -0.213 -12.3 -0.129 9.83 1.325 285 -- --
54 0.342 3.16 -0.195 0.192 1.25 -0.19 -- -0.128 9.65 1.652 282 -- --
54.03 0.342 3.19 -0.334 0.189 4.04 -- -12.2 -0.129 9.85 1.333 287 -- --
54.1 0.343 3.16 -0.215 0.19 1.31 -- -- -0.13 9.96 1.5 289 -- --
56.12 0.349 3.19 -0.333 -- 4.03 -- -12.5 -0.13 -- 1.337 285 -- --
58.01 0.357 3.16 -0.167 0.159 -- -0.309 -- -0.137 10 -- -- -- --
58.38 0.358 3.16 -0.179 0.16 -- -- -- -0.137 10.3 -- -- -- --
56.25 0.349 3.16 -0.213 -- 1.2 -- -- -0.13 -- 1.5 289 -- --
55.31 0.346 3.15 -- 0.193 1.25 -- -- -0.107 10 1.5 282 -- --
59.93 0.362 3.16 -0.182 -- -- -- -- -0.138 -- -- -- -- --
59.22 0.36 3.16 -- 0.161 -- -- -- -0.117 10.4 -- -- -- --
57.46 0.353 3.16 -- -- 1.14 -- -- -0.107 -- 1.5 282 -- --
60.8 0.364 3.16 -- -- -- -- -- -0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.77 atmosphere 1005.0 30 > th dose independent rect. 11 1
4 51.04 temperature 10.0 30 > th dose dependent rect. 12 23
7 51.23 temperature 30.0 10 < th dose independent rect. 11 2
10 51.32 atmosphere 1000.0 30 > th dose independent rect. 12 23
11 51.32 atmosphere 995.0 30 > th dose dependent rect. 11 1
22 51.75 wind 3.0 30 > th dose independent rect. 11 1
30 51.84 radiation 1.0 10 > th dose independent rect. 11 1
43 51.94 temperature 10.0 1440 > th dose independent rect. 12 1
47 51.94 atmosphere 995.0 1440 > th dose independent rect. 12 1
48 51.94 temperature 10.0 1440 > th dose independent rect. 13 23
52 51.96 temperature 10.0 30 > th dose independent rect. 11 1
54 51.96 atmosphere 995.0 30 > th dose independent rect. 11 1
55 51.96 atmosphere 1015.0 30 < th dose independent rect. 11 1
56 51.96 precipitation 0.1 30 < th dose independent rect. 11 1
57 51.96 temperature 10.0 30 > th dose independent rect. 12 23
58 51.96 precipitation 0.1 30 < th dose dependent rect. 11 1
59 51.97 humidity 50.0 90 > th dose independent rect. 11 1
66 51.99 precipitation 0.1 30 < th dose independent rect. 12 23
67 51.99 precipitation 0.1 30 < th dose dependent rect. 12 23
84 52.03 wind 9.0 30 < th dose independent rect. 11 1
89 52.07 wind 9.0 30 < th dose independent rect. 12 23
95 52.22 humidity 50.0 30 > th dose independent rect. 12 23
108 52.33 atmosphere 995.0 10 > th dose dependent rect. 11 17
167 52.63 wind 1.0 10 > th dose dependent rect. 11 1
200 52.86 wind 1.0 1440 > th dose independent rect. 17 4
202 52.89 wind 1.0 1440 < th dose independent rect. 17 4
203 52.89 atmosphere 1015.0 30 < th dose independent rect. 12 23
206 52.91 atmosphere 1000.0 10 > th dose independent rect. 4 7
212 52.95 temperature 30.0 30 < th dose independent rect. 11 17
220 53.00 radiation 40.0 10 < th dose independent rect. 13 22
238 53.07 precipitation 0.1 270 > th dose dependent rect. 8 11
239 53.07 temperature 30.0 90 < th dose dependent rect. 10 18
241 53.08 radiation 1.0 30 > th dose independent rect. 12 23
248 53.09 precipitation 0.1 10 < th dose independent rect. 11 17
251 53.09 wind 1.0 1440 < th dose dependent rect. 17 4
253 53.09 precipitation 0.1 10 < th dose dependent rect. 11 17
260 53.11 temperature 30.0 30 < th dose independent rect. 12 23
263 53.11 temperature 10.0 10 > th dose dependent rect. 3 8
268 53.12 temperature 30.0 90 < th dose dependent rect. 11 1
278 53.14 wind 9.0 10 < th dose independent rect. 4 7
279 53.14 temperature 10.0 10 > th dose independent rect. 4 7
281 53.14 humidity 50.0 10 > th dose independent rect. 4 7
283 53.14 atmosphere 1015.0 10 < th dose independent rect. 4 7
284 53.14 temperature 10.0 10 > th dose independent rect. 11 17
290 53.15 precipitation 0.1 10 < th dose independent rect. 4 7
292 53.15 precipitation 0.1 10 < th dose dependent rect. 4 7
300 53.19 temperature 30.0 10 < th dose independent rect. 4 7
327 53.25 temperature 30.0 270 < th dose dependent rect. 8 4
350 53.30 wind 9.0 10 < th dose independent rect. 11 17
351 53.30 atmosphere 995.0 10 > th dose independent rect. 11 17
367 53.34 temperature 10.0 10 > th dose dependent rect. 24 11
372 53.36 wind 1.0 30 > th dose independent rect. 12 23
390 53.39 wind 9.0 10 < th dose dependent rect. 4 7
391 53.40 atmosphere 1000.0 10 > th dose independent rect. 24 11
403 53.42 atmosphere 995.0 270 > th dose dependent rect. 8 4
413 53.45 radiation 40.0 10 < th dose independent rect. 4 7
420 53.46 humidity 50.0 30 > th dose independent rect. 11 17
445 53.50 wind 1.0 30 > th dose independent rect. 11 17
507 53.61 atmosphere 995.0 10 > th dose dependent rect. 11 13
515 53.63 precipitation 0.1 270 > th dose dependent sin 22 NA
519 53.64 wind 1.0 1440 > th dose independent rect. 17 2
534 53.65 wind 1.0 1440 < th dose dependent rect. 17 2
536 53.66 wind 1.0 1440 < th dose independent rect. 17 2
571 53.69 atmosphere 995.0 10 > th dose dependent rect. 4 7
587 53.70 temperature 10.0 270 > th dose dependent rect. 3 15
590 53.71 atmosphere 1015.0 10 < th dose independent rect. 11 17
593 53.71 humidity 80.0 14400 > th dose dependent rect. 22 7
597 53.71 atmosphere 995.0 30 > th dose dependent rect. 11 21
616 53.73 precipitation 0.1 270 > th dose independent rect. 8 10
618 53.73 temperature 30.0 30 < th dose independent rect. 11 13
625 53.74 humidity 90.0 14400 < th dose independent rect. 24 7
667 53.76 temperature 30.0 270 < th dose dependent rect. 7 21
689 53.78 temperature 10.0 1440 > th dose independent rect. 5 7
692 53.78 atmosphere 995.0 1440 > th dose independent rect. 5 7
693 53.78 temperature 10.0 1440 > th dose independent rect. 12 17
725 53.81 temperature 20.0 10 < th dose independent rect. 11 9
727 53.81 wind 9.0 10 < th dose independent rect. 24 11
728 53.81 temperature 10.0 10 > th dose independent rect. 24 11
730 53.81 humidity 50.0 10 > th dose independent rect. 24 11
732 53.81 precipitation 0.1 10 < th dose independent rect. 24 11
733 53.81 temperature 10.0 10 > th dose independent rect. 11 13
736 53.81 precipitation 0.1 10 < th dose dependent rect. 24 11
755 53.83 precipitation 0.1 10 < th dose independent rect. 11 13
761 53.83 precipitation 0.1 10 < th dose dependent rect. 11 13
786 53.86 temperature 30.0 10 < th dose independent rect. 24 11
787 53.86 atmosphere 1015.0 10 < th dose independent rect. 24 11
807 53.87 atmosphere 1015.0 30 < th dose dependent rect. 12 23
819 53.89 temperature 30.0 720 < th dose dependent rect. 1 2
820 53.89 temperature 30.0 90 < th dose dependent rect. 10 5
825 53.90 wind 1.0 10 > th dose independent rect. 11 13
860 53.93 temperature 10.0 30 > th dose dependent rect. 11 1
870 53.94 precipitation 0.1 270 > th dose dependent rect. 7 19
872 53.95 temperature 10.0 270 > th dose independent rect. 8 4
873 53.95 atmosphere 995.0 270 > th dose independent rect. 8 4
874 53.95 atmosphere 1015.0 270 < th dose independent rect. 8 4
878 53.95 atmosphere 995.0 10 > th dose independent rect. 11 13
887 53.96 humidity 80.0 14400 > th dose dependent rect. 1 6
889 53.96 humidity 50.0 10 > th dose dependent rect. 4 7
893 53.97 humidity 50.0 270 > th dose independent rect. 8 4
932 54.00 precipitation 0.1 270 < th dose independent rect. 8 4
934 54.00 temperature 10.0 1440 > th dose independent rect. 1 11
937 54.00 atmosphere 995.0 1440 > th dose independent rect. 1 11
938 54.00 temperature 10.0 1440 > th dose independent rect. 12 13
943 54.00 precipitation 0.1 270 < th dose dependent rect. 8 4
946 54.00 precipitation 0.1 270 > th dose dependent rect. 9 17
953 54.01 radiation 40.0 10 < th dose dependent rect. 4 7
959 54.02 wind 1.0 30 > th dose independent rect. 4 7