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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0394600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Inositol polyphosphate related phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.83 (0.0426) R2 : 0.531
β1 : -0.906 (0.156) R2dD : 0.0407 R2D : 0.0526
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.62 (0.125) R2dE : 0.476 R2E : 0.491
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0601 (0.0909) R2dN8 : 0.00102 R2N8 : -0.000448
σ : 0.796
deviance : 292.23
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : -0.6797
memory length : 1049
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.13
open length of G : 7.33

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
277.23 0.782 4.73 -1.05 3.08 -2.89 -0.747 -0.099 -0.0953 8.86 9.784 266 5.02 8.17
277.21 0.775 4.74 -1.05 3.07 -2.86 -0.797 -- -0.0983 8.86 9.48 264 5.03 8.18
278.69 0.778 4.73 -1.04 3.12 -2.86 -- -0.331 -0.0758 8.84 8.795 252 5.02 8.33
279.42 0.779 4.73 -1.07 3.11 -2.92 -- -- -0.0948 8.89 9.534 263 5.02 8.2
293.53 0.798 4.83 -0.909 -- -2.49 -- 0.696 -0.0721 -- -9.382 1062 5.02 7.41
359.43 0.889 4.8 -1.24 2.09 -- 0.157 -- -0.199 5.74 -- -- -- --
359.49 0.888 4.8 -1.24 2.09 -- -- -- -0.2 5.75 -- -- -- --
292.23 0.796 4.83 -0.906 -- -2.62 -- -- -0.0601 -- -0.6797 1049 5.13 7.33
309.25 0.819 4.71 -- 3.09 -2.91 -- -- -0.00198 8.82 11.17 248 5.05 8.23
586.3 1.13 4.83 -1.17 -- -- -- -- -0.151 -- -- -- -- --
399.94 0.935 4.77 -- 2.07 -- -- -- -0.0621 5.78 -- -- -- --
312.79 0.824 4.78 -- -- -2.82 -- -- 0.0933 -- 6.372 1065 5.22 6.87
622.63 1.16 4.8 -- -- -- -- -- -0.0205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 277.61 temperature 10.0 270 > th dose dependent rect. 5 8
19 290.65 temperature 15.0 10 > th dose dependent rect. 6 8
28 291.32 temperature 25.0 270 > th dose independent rect. 6 6
33 292.95 temperature 25.0 270 < th dose independent rect. 24 12
43 294.90 atmosphere 1010.0 14400 > th dose independent rect. 21 1
49 295.31 atmosphere 1010.0 14400 > th dose independent rect. 4 1
52 295.49 atmosphere 1010.0 14400 < th dose independent rect. 4 1
54 295.60 atmosphere 1000.0 270 > th dose independent rect. 24 18
55 295.62 atmosphere 1000.0 90 > th dose independent rect. 3 16
63 295.94 humidity 50.0 270 > th dose independent rect. 5 9
67 296.16 atmosphere 1010.0 14400 > th dose independent rect. 3 5
76 296.39 atmosphere 1010.0 14400 > th dose independent rect. 24 9
83 296.55 atmosphere 1010.0 14400 > th dose independent rect. 1 1
85 296.56 atmosphere 1010.0 14400 > th dose independent rect. 20 13
89 296.58 wind 1.0 270 > th dose independent rect. 6 18
91 296.60 atmosphere 1010.0 14400 > th dose independent rect. 20 10
99 296.66 atmosphere 1010.0 14400 > th dose independent rect. 20 6
103 296.69 atmosphere 1010.0 14400 < th dose independent rect. 20 1
169 297.32 atmosphere 1010.0 14400 > th dose independent sin 9 NA
174 297.37 wind 7.0 43200 > th dose independent rect. 11 4
199 297.66 humidity 90.0 90 < th dose independent rect. 21 17
204 297.71 atmosphere 1010.0 14400 < th dose independent rect. 1 1
205 297.71 wind 7.0 43200 > th dose independent rect. 13 2
208 297.74 wind 7.0 43200 < th dose independent rect. 13 2
220 297.87 wind 7.0 43200 < th dose independent rect. 11 4
233 297.97 atmosphere 1010.0 14400 < th dose independent rect. 20 10
234 297.97 wind 7.0 43200 > th dose dependent rect. 14 1
237 298.00 temperature 25.0 270 < th dose independent rect. 24 17
248 298.08 atmosphere 1010.0 14400 < th dose independent rect. 24 9
262 298.22 atmosphere 1010.0 14400 < th dose independent rect. 20 6
286 298.41 wind 9.0 270 < th dose independent rect. 14 15
336 298.77 temperature 10.0 270 > th dose dependent rect. 19 16
340 298.79 temperature 10.0 270 > th dose dependent rect. 6 18
354 298.90 precipitation 0.1 270 < th dose independent rect. 5 9
356 298.90 precipitation 0.1 270 < th dose dependent rect. 5 9
357 298.91 atmosphere 1010.0 14400 < th dose independent sin 9 NA
407 299.21 temperature 10.0 270 > th dose independent rect. 5 9
408 299.21 atmosphere 995.0 270 > th dose independent rect. 5 9
409 299.21 atmosphere 1015.0 270 < th dose independent rect. 5 9
410 299.21 temperature 10.0 270 > th dose independent rect. 14 15
431 299.37 wind 1.0 270 > th dose independent rect. 5 9
443 299.46 radiation 1.0 270 > th dose independent rect. 18 20
456 299.56 temperature 20.0 270 > th dose dependent rect. 19 17
465 299.66 radiation 1.0 270 > th dose independent rect. 5 9
520 299.97 wind 9.0 43200 > th dose independent rect. 11 1
529 300.01 wind 9.0 43200 > th dose dependent rect. 14 3
534 300.03 wind 9.0 270 < th dose independent rect. 5 9
538 300.07 atmosphere 1010.0 14400 > th dose independent rect. 8 1
545 300.12 humidity 90.0 270 < th dose independent rect. 19 18
546 300.14 wind 9.0 43200 < th dose independent rect. 11 1
570 300.32 temperature 30.0 10 < th dose independent rect. 3 16
575 300.37 humidity 90.0 270 < th dose independent rect. 4 9
606 300.58 radiation 40.0 270 < th dose independent rect. 14 15
653 300.89 atmosphere 1010.0 14400 > th dose independent no NA NA
659 300.91 atmosphere 1010.0 14400 > th dose independent rect. 23 23
660 300.92 radiation 1.0 270 < th dose independent rect. 24 9
682 301.04 atmosphere 1010.0 14400 < th dose independent rect. 8 1
685 301.05 atmosphere 1010.0 14400 > th dose independent rect. 7 23
689 301.07 precipitation 0.1 90 < th dose independent rect. 19 8
692 301.07 precipitation 0.1 90 < th dose dependent rect. 19 8
695 301.10 temperature 25.0 90 < th dose independent rect. 3 10
696 301.11 radiation 20.0 43200 < th dose independent rect. 7 1
703 301.12 atmosphere 1010.0 14400 > th dose independent rect. 3 23
724 301.23 atmosphere 995.0 270 > th dose independent rect. 14 15
726 301.24 wind 9.0 43200 > th dose independent rect. 10 7
750 301.33 atmosphere 1010.0 14400 < th dose independent rect. 11 22
758 301.38 radiation 1.0 270 > th dose independent sin 5 NA
781 301.44 atmosphere 1010.0 14400 < th dose independent rect. 24 22
789 301.46 atmosphere 1010.0 14400 < th dose independent rect. 8 23
801 301.52 atmosphere 1010.0 14400 < th dose independent no NA NA
814 301.57 radiation 1.0 270 < th dose independent sin 5 NA
832 301.67 atmosphere 1010.0 14400 < th dose independent rect. 3 23
837 301.70 wind 9.0 90 < th dose independent rect. 3 16
847 301.74 wind 9.0 43200 > th dose independent rect. 10 9
858 301.77 temperature 25.0 10 > th dose dependent rect. 21 17
889 301.90 wind 9.0 43200 < th dose independent rect. 10 7
898 301.94 radiation 1.0 270 < th dose dependent sin 5 NA
908 302.01 radiation 10.0 43200 < th dose independent rect. 18 16
929 302.11 radiation 10.0 270 < th dose independent rect. 9 15
957 302.22 wind 7.0 43200 > th dose dependent rect. 11 1
976 302.33 atmosphere 1010.0 14400 < th dose independent rect. 8 4
994 302.35 radiation 20.0 43200 > th dose dependent rect. 16 16
998 302.38 temperature 10.0 90 > th dose independent rect. 19 8
999 302.38 temperature 30.0 90 < th dose independent rect. 19 8
1000 302.38 humidity 50.0 90 > th dose independent rect. 19 8