Os09g0392800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0392800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.07 | 0.55 | 4.16 | 0.257 | 0.775 | 1.42 | 0.264 | 0.156 | -0.205 | 8.5 | 22.7 | 557 | -- | -- |
| 137.09 | 0.545 | 4.15 | 0.273 | 0.778 | 1.4 | 0.301 | -- | -0.203 | 8.5 | 22.7 | 556 | -- | -- |
| 137.26 | 0.546 | 4.16 | 0.25 | 0.773 | 1.47 | -- | 0.319 | -0.21 | 8.51 | 22.6 | 551 | -- | -- |
| 137.37 | 0.546 | 4.15 | 0.282 | 0.777 | 1.4 | -- | -- | -0.203 | 8.5 | 22.7 | 553 | -- | -- |
| 161.82 | 0.592 | 4.14 | 0.456 | -- | 1.66 | -- | -0.811 | -0.105 | -- | 32.74 | 612 | -- | -- |
| 159.79 | 0.593 | 4.2 | -0.0649 | 0.901 | -- | 0.235 | -- | -0.405 | 8.53 | -- | -- | -- | -- |
| 159.97 | 0.592 | 4.2 | -0.0575 | 0.9 | -- | -- | -- | -0.405 | 8.53 | -- | -- | -- | -- |
| 162.1 | 0.593 | 4.15 | 0.343 | -- | 1.63 | -- | -- | -0.108 | -- | 31.2 | 610 | -- | -- |
| 139.21 | 0.55 | 4.16 | -- | 0.792 | 1.24 | -- | -- | -0.246 | 8.52 | 22.8 | 542 | -- | -- |
| 205.41 | 0.67 | 4.22 | -0.054 | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
| 160.05 | 0.592 | 4.19 | -- | 0.9 | -- | -- | -- | -0.399 | 8.54 | -- | -- | -- | -- |
| 165.11 | 0.598 | 4.17 | -- | -- | 1.52 | -- | -- | -0.18 | -- | 31.84 | 608 | -- | -- |
| 205.48 | 0.669 | 4.22 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 2 | 136.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 4 | 136.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 5 | 136.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 6 | 136.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 9 | 136.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 13 | 136.87 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 18 |
| 15 | 136.98 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 13 |
| 17 | 137.05 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 19 | 137.10 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 2 |
| 24 | 137.13 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 28 | 137.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 60 | 137.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 69 | 137.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 79 | 137.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 83 | 137.94 | wind | 9 | 720 | > th | dose independent | rect. | 18 | 16 |
| 84 | 137.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 86 | 137.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 127 | 138.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 134 | 138.28 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 5 |
| 152 | 138.39 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 158 | 138.41 | temperature | 20 | 720 | < th | dose dependent | sin | 9 | NA |
| 190 | 138.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 195 | 138.57 | temperature | 20 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 199 | 138.59 | humidity | 90 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 211 | 138.66 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 230 | 138.71 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 234 | 138.72 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 18 |
| 257 | 138.78 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 9 |
| 261 | 138.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 276 | 138.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 279 | 138.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 284 | 138.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 291 | 138.89 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 7 |
| 305 | 138.93 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 7 |
| 338 | 139.03 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 20 |
| 343 | 139.05 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 409 | 139.22 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 438 | 139.30 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 7 |
| 449 | 139.33 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 474 | 139.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 19 |
| 499 | 139.46 | wind | 9 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 627 | 139.74 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 23 |
| 645 | 139.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 715 | 139.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 811 | 140.19 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 814 | 140.20 | humidity | 80 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 837 | 140.24 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 987 | 140.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 11 |
| 993 | 140.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 13 |