FiT-DB / Search/ Help/ Sample detail

Os09g0392400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.8 (0.0161) R2 : 0.127
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.276 (0.0339) R2dN8 : 0.163 R2N8 : 0.127
σ : 0.303
deviance : 42.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.37 0.222 9.8 -0.209 0.424 0.432 -0.411 -0.0501 0.262 3.33 29.29 2101 -- --
22.37 0.22 9.8 -0.212 0.423 0.432 -0.41 -- 0.263 3.32 29.3 2095 -- --
22.9 0.223 9.8 -0.208 0.424 0.43 -- -0.0202 0.263 3.32 29.28 2106 -- --
22.9 0.223 9.8 -0.212 0.423 0.428 -- -- 0.263 3.32 29.3 2106 -- --
31.78 0.263 9.76 0.0965 -- 0.596 -- -1.12 0.375 -- 29.1 1873 -- --
27.93 0.248 9.8 -0.328 0.457 -- -0.427 -- 0.227 3.93 -- -- -- --
28.46 0.25 9.8 -0.322 0.455 -- -- -- 0.23 3.99 -- -- -- --
32.17 0.264 9.79 -0.177 -- 0.471 -- -- 0.294 -- 29.07 1876 -- --
24.03 0.228 9.79 -- 0.412 0.463 -- -- 0.291 3.26 29.23 2106 -- --
39.78 0.295 9.8 -0.303 -- -- -- -- 0.242 -- -- -- -- --
31.19 0.261 9.79 -- 0.449 -- -- -- 0.266 4 -- -- -- --
32.95 0.267 9.79 -- -- 0.502 -- -- 0.32 -- 28.95 1876 -- --
42.2 0.303 9.8 -- -- -- -- -- 0.276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.08 humidity 60.0 14400 < th dose independent rect. 17 1
2 21.32 humidity 60.0 14400 > th dose independent rect. 17 1
5 21.58 humidity 60.0 14400 > th dose independent rect. 17 15
6 21.61 humidity 60.0 14400 > th dose independent rect. 17 5
10 21.62 humidity 60.0 14400 > th dose independent rect. 17 13
18 21.66 humidity 60.0 14400 < th dose independent rect. 17 15
19 21.69 humidity 60.0 14400 < th dose independent rect. 17 5
32 21.94 humidity 70.0 14400 < th dose dependent rect. 17 2
34 22.04 humidity 70.0 14400 < th dose dependent rect. 17 15
64 22.24 atmosphere 1000.0 43200 < th dose dependent rect. 15 1
65 22.25 precipitation 0.1 43200 > th dose dependent rect. 19 2
84 22.31 temperature 30.0 14400 > th dose dependent rect. 17 1
85 22.31 temperature 30.0 14400 > th dose dependent rect. 17 16
95 22.32 wind 9.0 43200 > th dose dependent rect. 20 10
109 22.36 temperature 30.0 14400 > th dose independent rect. 17 1
129 22.40 temperature 30.0 14400 < th dose independent rect. 17 11
130 22.40 temperature 30.0 14400 < th dose independent rect. 17 15
131 22.41 temperature 30.0 14400 < th dose independent rect. 17 2
151 22.42 wind 7.0 43200 > th dose dependent rect. 18 21
153 22.43 wind 9.0 43200 < th dose independent rect. 18 13
159 22.45 atmosphere 1000.0 43200 > th dose independent rect. 11 1
165 22.46 atmosphere 1000.0 43200 < th dose independent rect. 11 1
180 22.47 wind 9.0 43200 > th dose independent rect. 19 12
191 22.48 wind 9.0 43200 > th dose dependent sin 13 NA
192 22.48 wind 9.0 43200 > th dose dependent rect. 20 1
212 22.50 precipitation 0.1 4320 > th dose dependent rect. 20 22
215 22.51 wind 9.0 43200 < th dose independent rect. 18 20
249 22.55 wind 9.0 43200 > th dose independent sin 12 NA
264 22.55 wind 7.0 43200 > th dose dependent rect. 12 23
268 22.56 atmosphere 1000.0 43200 > th dose independent rect. 10 5
277 22.57 atmosphere 1000.0 43200 < th dose independent rect. 14 1
295 22.59 wind 9.0 43200 > th dose independent rect. 17 21
298 22.59 wind 7.0 43200 > th dose dependent rect. 23 22
310 22.60 wind 7.0 43200 > th dose dependent no NA NA
311 22.60 wind 9.0 43200 > th dose dependent rect. 19 3
317 22.60 wind 7.0 43200 > th dose dependent rect. 2 19
332 22.61 wind 9.0 43200 < th dose independent sin 12 NA
335 22.61 atmosphere 1000.0 43200 < th dose independent rect. 4 11
349 22.62 atmosphere 1000.0 43200 > th dose independent rect. 14 1
350 22.62 atmosphere 1000.0 43200 < th dose independent rect. 4 1
356 22.62 atmosphere 1000.0 43200 < th dose independent rect. 4 9
359 22.62 atmosphere 1000.0 43200 > th dose independent rect. 4 11
368 22.62 wind 7.0 43200 > th dose dependent rect. 6 23
376 22.63 atmosphere 995.0 43200 > th dose independent rect. 14 8
386 22.63 radiation 1.0 43200 < th dose dependent rect. 21 4
395 22.63 wind 7.0 43200 > th dose dependent rect. 10 23
415 22.64 radiation 1.0 43200 < th dose dependent rect. 21 6
436 22.65 atmosphere 1000.0 43200 > th dose independent rect. 4 8
451 22.65 wind 5.0 43200 > th dose dependent rect. 6 1
458 22.66 humidity 70.0 1440 > th dose independent rect. 16 3
469 22.66 radiation 1.0 43200 < th dose dependent rect. 19 8
481 22.67 temperature 30.0 1440 < th dose independent rect. 15 2
486 22.67 temperature 30.0 1440 < th dose independent rect. 14 4
490 22.67 atmosphere 995.0 43200 < th dose independent rect. 14 8
491 22.67 wind 9.0 43200 > th dose independent rect. 19 19
513 22.68 atmosphere 1000.0 43200 < th dose dependent sin 21 NA
532 22.69 temperature 30.0 1440 > th dose independent rect. 15 2
555 22.70 wind 9.0 43200 < th dose independent rect. 13 22
569 22.71 wind 5.0 43200 > th dose independent rect. 6 1
601 22.72 atmosphere 1000.0 43200 > th dose independent rect. 4 3
602 22.72 temperature 30.0 1440 > th dose independent rect. 14 4
613 22.72 precipitation 0.1 43200 > th dose dependent rect. 17 4
635 22.73 humidity 70.0 1440 > th dose independent rect. 16 14
638 22.73 wind 9.0 43200 > th dose dependent rect. 19 5
646 22.73 wind 9.0 43200 > th dose dependent rect. 14 18
665 22.74 wind 7.0 43200 > th dose independent rect. 15 21
672 22.74 wind 9.0 43200 > th dose dependent rect. 17 14
684 22.75 temperature 30.0 43200 < th dose independent rect. 9 1
685 22.75 precipitation 0.1 43200 < th dose independent rect. 17 1
686 22.75 temperature 30.0 1440 < th dose independent rect. 11 7
688 22.75 atmosphere 995.0 43200 > th dose independent rect. 13 10
689 22.75 atmosphere 995.0 43200 < th dose independent rect. 13 10
695 22.75 precipitation 0.1 43200 < th dose dependent rect. 17 1
724 22.76 wind 9.0 43200 > th dose independent rect. 19 5
753 22.77 temperature 30.0 43200 > th dose independent rect. 9 1
755 22.77 atmosphere 1000.0 43200 > th dose independent rect. 6 1
758 22.77 atmosphere 1000.0 43200 < th dose independent rect. 6 1
785 22.77 wind 5.0 43200 < th dose independent rect. 15 19
790 22.77 temperature 25.0 1440 > th dose dependent rect. 18 1
798 22.78 atmosphere 1000.0 43200 > th dose independent rect. 22 1
802 22.78 atmosphere 1000.0 43200 < th dose independent rect. 22 1
815 22.78 wind 9.0 43200 < th dose independent rect. 19 6
825 22.78 wind 5.0 43200 < th dose independent rect. 15 21
833 22.78 wind 7.0 43200 > th dose dependent rect. 1 15
864 22.79 temperature 30.0 1440 < th dose independent rect. 8 10
884 22.79 temperature 30.0 1440 < th dose independent rect. 14 19
892 22.79 temperature 30.0 1440 < th dose independent rect. 11 22
903 22.79 precipitation 0.1 4320 > th dose dependent rect. 2 16
921 22.80 temperature 30.0 43200 < th dose independent rect. 3 7
996 22.81 temperature 30.0 14400 > th dose independent sin 12 NA
997 22.81 temperature 30.0 14400 < th dose independent sin 12 NA