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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0389500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.89 (0.0507) R2 : 0.339
β1 : -0.72 (0.187) R2dD : 0.0247 R2D : -0.0421
β2 : 0.967 (0.123) R2dC : 0.0907 R2C : 0.0297
β3 : 1.07 (0.186) R2dE : 0.0652 R2E : -0.0202
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.34 (0.622) R2dD*E : 0.247 R2D*E : 0.0422
γ1 : -0.624 (0.114) R2dN8 : 0.0705 R2N8 : 0.0333
σ : 0.908
deviance : 380.38
__
_____
C
peak time of C : 15.6
E
wheather : radiation
threshold : 19.69
memory length : 4226
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6
open length of G : 1.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
381.13 0.917 5.89 -0.707 0.968 1 0.0239 6.91 -0.63 15.6 19.69 4318 6.03 1.95
460.55 1 5.76 -0.587 0.886 0.833 -0.188 -- -0.391 15.7 20 2801 6.33 2.41
380.38 0.908 5.89 -0.72 0.967 1.07 -- 7.34 -0.624 15.6 19.69 4226 6 1.93
458.18 0.997 5.74 -0.52 0.885 0.935 -- -- -0.297 15.4 20.05 2762 6.93 2.15
431.95 0.968 5.91 -0.777 -- 1.02 -- 7.26 -0.685 -- 19.64 4221 6.01 1.9
501.43 1.05 5.79 -0.575 0.849 -- -0.162 -- -0.591 15.7 -- -- -- --
501.5 1.05 5.79 -0.577 0.848 -- -- -- -0.592 15.7 -- -- -- --
487.2 1.03 5.71 -0.859 -- 1.34 -- -- -0.44 -- 19.09 2232 8.12 2.05
459.51 0.998 5.71 -- 0.84 1.06 -- -- -0.281 15 27.99 2768 8.08 1.9
541.29 1.09 5.79 -0.613 -- -- -- -- -0.614 -- -- -- -- --
510.29 1.06 5.78 -- 0.859 -- -- -- -0.528 15.7 -- -- -- --
500.08 1.04 5.73 -- -- 1.25 -- -- -0.43 -- 17.79 2231 8.12 2.32
551.19 1.1 5.77 -- -- -- -- -- -0.546 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 350.12 wind 3 43200 > th dose independent rect. 6 3
2 350.27 wind 3 43200 < th dose independent rect. 6 3
3 350.83 wind 3 43200 < th dose independent rect. 5 5
4 350.97 wind 3 43200 > th dose independent rect. 5 5
14 352.26 wind 3 43200 > th dose independent rect. 2 8
42 353.87 wind 3 43200 < th dose dependent rect. 3 8
59 354.48 wind 1 43200 > th dose dependent rect. 6 1
90 355.74 wind 3 43200 < th dose independent sin 7 NA
108 356.40 wind 1 43200 > th dose independent rect. 1 1
115 356.54 wind 7 43200 < th dose dependent rect. 6 1
116 356.59 wind 3 43200 > th dose independent sin 6 NA
170 358.50 wind 1 43200 < th dose independent rect. 1 1
175 358.73 wind 5 43200 < th dose dependent rect. 6 3
180 358.87 wind 5 43200 < th dose dependent rect. 5 5
187 359.07 wind 5 43200 < th dose dependent rect. 23 13
221 359.96 wind 5 43200 < th dose dependent sin 7 NA
235 360.46 humidity 90 14400 > th dose dependent rect. 12 14
246 360.65 humidity 90 14400 > th dose dependent rect. 6 20
256 360.82 humidity 90 14400 > th dose dependent rect. 9 17
261 360.98 humidity 90 14400 > th dose dependent sin 18 NA
319 362.18 humidity 90 14400 > th dose dependent rect. 5 17
331 362.41 humidity 80 43200 > th dose independent rect. 4 1
376 363.38 wind 3 43200 < th dose dependent rect. 1 3
382 363.54 humidity 80 43200 < th dose independent rect. 4 3
395 363.74 humidity 80 43200 < th dose independent rect. 4 1
408 363.96 humidity 80 43200 > th dose independent rect. 2 5
416 364.12 humidity 80 14400 > th dose independent rect. 8 4
435 364.49 wind 1 43200 > th dose dependent rect. 23 11
483 365.08 humidity 80 14400 > th dose independent rect. 8 12
502 365.31 wind 1 43200 > th dose dependent sin 6 NA
512 365.43 wind 1 43200 > th dose dependent rect. 23 14
559 365.93 humidity 90 14400 > th dose dependent sin 23 NA
570 366.08 humidity 90 14400 > th dose independent sin 18 NA
594 366.27 humidity 90 14400 > th dose independent rect. 18 2
621 366.48 humidity 80 14400 < th dose independent rect. 8 12
678 366.85 humidity 90 14400 > th dose independent rect. 12 13
762 367.43 humidity 80 14400 > th dose independent rect. 8 7
774 367.53 humidity 90 14400 > th dose independent rect. 9 17
785 367.61 humidity 90 14400 > th dose independent rect. 6 21
790 367.66 wind 9 14400 > th dose dependent rect. 10 1
808 367.78 humidity 80 14400 < th dose independent rect. 8 7
825 367.89 humidity 60 14400 > th dose dependent rect. 14 1
840 368.03 humidity 80 14400 > th dose dependent rect. 19 1
847 368.08 humidity 80 43200 < th dose dependent rect. 5 1
858 368.18 humidity 90 14400 > th dose independent rect. 14 7
859 368.19 humidity 80 14400 < th dose independent rect. 8 4
860 368.22 humidity 70 14400 > th dose dependent rect. 10 9
884 368.39 humidity 70 14400 > th dose dependent rect. 13 6
911 368.59 humidity 90 14400 > th dose independent rect. 15 5
930 368.76 humidity 90 14400 > th dose independent rect. 1 21
980 369.13 humidity 90 14400 > th dose dependent rect. 6 2