Os09g0386200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os09g0386200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.11 | 0.286 | 12.9 | 0.592 | 0.655 | -1.74 | -0.597 | -1.47 | 0.0661 | 2.44 | 20.25 | 227 | -- | -- |
| 37.2 | 0.284 | 12.9 | 0.592 | 0.677 | -1 | -0.643 | -- | 0.0405 | 2.4 | 21.8 | 177 | -- | -- |
| 38.31 | 0.288 | 12.9 | 0.621 | 0.658 | -1.78 | -- | -1.75 | 0.0686 | 2.33 | 20.35 | 222 | -- | -- |
| 38.61 | 0.289 | 12.9 | 0.616 | 0.669 | -0.971 | -- | -- | 0.047 | 2.24 | 21.96 | 162 | -- | -- |
| 61.07 | 0.364 | 12.9 | 0.687 | -- | -1.6 | -- | -1.5 | 0.0913 | -- | 19.67 | 414 | -- | -- |
| 46.25 | 0.319 | 12.9 | 0.794 | 0.581 | -- | -0.584 | -- | 0.146 | 2.4 | -- | -- | -- | -- |
| 47.47 | 0.323 | 12.9 | 0.81 | 0.578 | -- | -- | -- | 0.149 | 2.25 | -- | -- | -- | -- |
| 59.9 | 0.36 | 12.9 | 0.618 | -- | -0.859 | -- | -- | 0.0462 | -- | 21.36 | 902 | -- | -- |
| 47.4 | 0.321 | 13 | -- | 0.696 | -1.34 | -- | -- | -0.0425 | 2.35 | 21.67 | 211 | -- | -- |
| 67.34 | 0.383 | 12.9 | 0.835 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 64.77 | 0.376 | 12.9 | -- | 0.593 | -- | -- | -- | 0.0591 | 2.27 | -- | -- | -- | -- |
| 63.73 | 0.372 | 13 | -- | -- | -1.3 | -- | -- | -0.0604 | -- | 20.04 | 6927 | -- | -- |
| 85.72 | 0.432 | 12.9 | -- | -- | -- | -- | -- | 0.0707 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.92 | temperature | 15 | 270 | > th | dose independent | rect. | 1 | 11 |
| 2 | 36.08 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 9 |
| 3 | 36.10 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 18 |
| 5 | 36.49 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 13 |
| 7 | 36.58 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 8 | 36.59 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 21 |
| 9 | 36.59 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 18 |
| 17 | 36.63 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 24 | 5 |
| 43 | 36.84 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 18 |
| 44 | 36.86 | temperature | 15 | 720 | > th | dose independent | rect. | 1 | 18 |
| 52 | 36.94 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 24 | 13 |
| 76 | 37.12 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 10 |
| 81 | 37.13 | temperature | 20 | 270 | < th | dose dependent | sin | 6 | NA |
| 87 | 37.16 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 88 | 37.17 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 4 |
| 92 | 37.19 | wind | 7 | 90 | < th | dose independent | rect. | 3 | 9 |
| 93 | 37.19 | wind | 7 | 270 | < th | dose independent | rect. | 1 | 11 |
| 98 | 37.21 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 110 | 37.26 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 114 | 37.27 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 124 | 37.29 | temperature | 15 | 720 | > th | dose independent | rect. | 24 | 5 |
| 132 | 37.31 | temperature | 20 | 270 | < th | dose dependent | sin | 23 | NA |
| 139 | 37.33 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 157 | 37.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 166 | 37.46 | temperature | 20 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 177 | 37.54 | wind | 7 | 10 | < th | dose independent | rect. | 4 | 9 |
| 186 | 37.56 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 24 | 19 |
| 198 | 37.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 212 | 37.71 | temperature | 15 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 240 | 37.84 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 17 |
| 290 | 38.02 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 16 |
| 310 | 38.06 | temperature | 20 | 30 | < th | dose dependent | sin | 4 | NA |
| 315 | 38.07 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 320 | 38.08 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 13 |
| 324 | 38.09 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 328 | 38.09 | humidity | 80 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 361 | 38.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 365 | 38.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 378 | 38.20 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 440 | 38.31 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 445 | 38.32 | temperature | 15 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 451 | 38.33 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 23 |
| 453 | 38.34 | temperature | 15 | 720 | > th | dose independent | rect. | 7 | 6 |
| 463 | 38.35 | temperature | 15 | 720 | > th | dose independent | rect. | 7 | 23 |
| 469 | 38.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 488 | 38.40 | temperature | 15 | 720 | > th | dose independent | sin | 4 | NA |
| 500 | 38.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 511 | 38.44 | temperature | 10 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 547 | 38.50 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 558 | 38.52 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 577 | 38.54 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 5 |
| 582 | 38.54 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 591 | 38.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 604 | 38.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 614 | 38.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 621 | 38.58 | temperature | 15 | 720 | > th | dose independent | rect. | 21 | 21 |
| 646 | 38.61 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 6 |
| 673 | 38.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 675 | 38.65 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 5 |
| 687 | 38.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 694 | 38.68 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 18 | 18 |
| 706 | 38.69 | temperature | 20 | 10 | < th | dose dependent | sin | 22 | NA |
| 748 | 38.74 | temperature | 15 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 761 | 38.75 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 767 | 38.76 | temperature | 15 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 769 | 38.76 | temperature | 15 | 720 | < th | dose independent | rect. | 3 | 11 |
| 793 | 38.78 | temperature | 15 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 802 | 38.79 | temperature | 15 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 808 | 38.79 | temperature | 15 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 809 | 38.79 | temperature | 15 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 857 | 38.81 | temperature | 15 | 4320 | < th | dose independent | sin | 21 | NA |
| 861 | 38.81 | temperature | 15 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 921 | 38.84 | temperature | 15 | 4320 | > th | dose independent | sin | 23 | NA |
| 924 | 38.84 | temperature | 15 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 945 | 38.85 | humidity | 90 | 720 | > th | dose independent | rect. | 11 | 2 |
| 973 | 38.86 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 985 | 38.87 | temperature | 15 | 4320 | < th | dose dependent | rect. | 20 | 6 |