Os09g0385300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0385300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.31 | 0.298 | 7.36 | 0.0507 | 0.322 | -1.03 | -0.823 | -0.666 | 0.0759 | 6.01 | 22.83 | 1361 | -- | -- |
| 40.75 | 0.297 | 7.37 | -0.0214 | 0.329 | -0.922 | -0.732 | -- | 0.0671 | 5.78 | 22.7 | 1459 | -- | -- |
| 41.85 | 0.301 | 7.36 | 0.0154 | 0.325 | -1.06 | -- | -0.576 | 0.0739 | 5.53 | 22.6 | 1465 | -- | -- |
| 42.14 | 0.302 | 7.37 | -0.0504 | 0.321 | -0.963 | -- | -- | 0.0614 | 5.48 | 22.58 | 1467 | -- | -- |
| 47.14 | 0.32 | 7.36 | 0.0271 | -- | -1.06 | -- | -0.561 | 0.0838 | -- | 22.7 | 1357 | -- | -- |
| 49.49 | 0.33 | 7.34 | 0.224 | 0.346 | -- | -0.858 | -- | 0.206 | 5.82 | -- | -- | -- | -- |
| 51.21 | 0.335 | 7.34 | 0.217 | 0.343 | -- | -- | -- | 0.209 | 5.41 | -- | -- | -- | -- |
| 47.46 | 0.321 | 7.37 | -0.0425 | -- | -0.962 | -- | -- | 0.0585 | -- | 22.7 | 1353 | -- | -- |
| 42.19 | 0.303 | 7.37 | -- | 0.324 | -0.929 | -- | -- | 0.0734 | 5.51 | 22.6 | 1466 | -- | -- |
| 57.34 | 0.354 | 7.34 | 0.229 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 52.46 | 0.339 | 7.34 | -- | 0.347 | -- | -- | -- | 0.185 | 5.39 | -- | -- | -- | -- |
| 47.47 | 0.321 | 7.37 | -- | -- | -0.953 | -- | -- | 0.0749 | -- | 22.7 | 1350 | -- | -- |
| 58.72 | 0.358 | 7.35 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.65 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 2 | 37.75 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 4 | 37.80 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 6 | 37.84 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 10 | 37.91 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 21 | 38.02 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 31 | 38.10 | wind | 3 | 14400 | < th | dose independent | sin | 7 | NA |
| 44 | 38.14 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 50 | 38.18 | wind | 3 | 14400 | > th | dose independent | sin | 7 | NA |
| 56 | 38.19 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 72 | 38.23 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 157 | 38.56 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 159 | 38.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 183 | 38.66 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 188 | 38.66 | wind | 5 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 238 | 38.84 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 257 | 38.90 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 260 | 38.91 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 15 |
| 275 | 38.94 | wind | 3 | 14400 | < th | dose dependent | sin | 7 | NA |
| 419 | 39.25 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 521 | 39.42 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 596 | 39.52 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 618 | 39.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 650 | 39.60 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 691 | 39.65 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 737 | 39.72 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 798 | 39.81 | wind | 1 | 14400 | > th | dose dependent | sin | 7 | NA |
| 836 | 39.86 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 12 |