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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0383300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0456) R2 : 0.00361
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.096) R2dN8 : 0.00466 R2N8 : 0.00361
σ : 0.858
deviance : 338.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
316.73 0.836 3.25 -0.341 0.439 0.27 0.453 -3.34 0.116 11.6 0.6467 1862 -- --
318.85 0.832 3.21 -0.424 0.397 0.449 0.153 -- 0.158 12.4 3.329 16193 -- --
317.44 0.83 3.25 -0.344 0.44 0.256 -- -3.31 0.115 11.6 0.5944 2101 -- --
318.23 0.831 3.19 -0.527 0.43 0.632 -- -- 0.142 11.8 4.176 16164 -- --
329.36 0.845 3.25 -0.35 -- 0.381 -- -3.09 0.141 -- 0.7357 2008 -- --
322.87 0.842 3.22 -0.291 0.45 -- 0.297 -- 0.0951 11.7 -- -- -- --
323.25 0.842 3.22 -0.279 0.449 -- -- -- 0.0965 11.8 -- -- -- --
329.5 0.845 3.18 -0.509 -- 0.781 -- -- 0.155 -- 3.266 16425 -- --
322.99 0.837 3.2 -- 0.428 0.448 -- -- 0.175 11.9 3.116 16577 -- --
335.92 0.856 3.23 -0.292 -- -- -- -- 0.0909 -- -- -- -- --
325.31 0.844 3.21 -- 0.452 -- -- -- 0.128 11.8 -- -- -- --
334.49 0.852 3.21 -- -- 0.571 -- -- 0.176 -- 3.122 16601 -- --
338.18 0.858 3.22 -- -- -- -- -- 0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 305.62 atmosphere 1005.0 10 > th dose dependent rect. 20 1
2 305.77 wind 9.0 30 < th dose independent rect. 21 23
3 305.78 temperature 30.0 30 < th dose dependent rect. 20 1
5 305.85 wind 9.0 90 > th dose independent rect. 13 2
6 305.86 wind 9.0 90 > th dose dependent rect. 13 2
10 306.24 wind 9.0 10 > th dose independent rect. 13 1
22 306.24 wind 9.0 10 > th dose dependent rect. 13 1
36 306.41 atmosphere 1000.0 30 > th dose independent rect. 20 1
38 306.49 humidity 50.0 30 > th dose dependent rect. 20 1
40 306.54 wind 1.0 30 > th dose independent rect. 20 1
41 306.54 wind 9.0 30 < th dose independent rect. 20 1
42 306.54 temperature 10.0 30 > th dose independent rect. 20 1
44 306.54 temperature 30.0 30 < th dose independent rect. 20 1
45 306.54 humidity 50.0 30 > th dose independent rect. 20 1
49 306.54 atmosphere 1010.0 30 < th dose independent rect. 20 1
51 306.54 radiation 1.0 30 < th dose independent rect. 20 1
56 306.54 precipitation 0.1 30 < th dose independent rect. 20 1
57 306.54 temperature 10.0 30 > th dose independent rect. 21 23
59 306.54 radiation 1.0 30 < th dose dependent rect. 20 1
64 306.54 precipitation 0.1 30 < th dose dependent rect. 20 1
66 306.60 wind 9.0 30 < th dose dependent rect. 20 1
71 306.76 radiation 10.0 10 < th dose dependent rect. 11 2
72 306.80 wind 1.0 30 > th dose dependent rect. 20 1
77 306.97 humidity 90.0 30 < th dose independent rect. 20 1
78 306.97 temperature 10.0 30 > th dose dependent rect. 20 1
86 307.29 atmosphere 1015.0 30 < th dose dependent rect. 20 1
116 307.58 temperature 10.0 1440 > th dose independent rect. 21 1
119 307.58 temperature 30.0 1440 < th dose independent rect. 21 1
123 307.58 humidity 50.0 1440 > th dose independent rect. 21 1
129 307.58 atmosphere 995.0 1440 > th dose independent rect. 21 1
130 307.58 radiation 1.0 1440 < th dose independent rect. 21 1
150 307.58 temperature 10.0 1440 > th dose independent rect. 22 23
157 307.77 humidity 90.0 30 < th dose dependent rect. 20 1
158 307.78 radiation 40.0 1440 < th dose dependent rect. 21 1
199 309.51 temperature 20.0 30 < th dose independent rect. 7 1
202 309.51 temperature 20.0 30 < th dose dependent rect. 7 1
206 309.62 radiation 1.0 10 < th dose independent rect. 7 5
209 309.62 radiation 1.0 10 < th dose dependent rect. 7 5
218 309.95 temperature 20.0 90 < th dose independent rect. 7 9
221 309.98 radiation 1.0 90 < th dose independent rect. 10 1
228 310.00 temperature 20.0 10 < th dose independent rect. 7 8
232 310.01 temperature 20.0 10 < th dose dependent rect. 7 7
237 310.03 wind 5.0 10 > th dose independent rect. 8 1
246 310.03 wind 5.0 10 > th dose dependent rect. 8 1
251 310.04 temperature 20.0 10 < th dose dependent rect. 7 5
286 310.28 temperature 20.0 90 < th dose dependent rect. 7 12
320 310.63 wind 9.0 1440 < th dose independent rect. 21 1
372 311.61 radiation 30.0 10 > th dose independent rect. 13 1
384 313.25 radiation 20.0 10 > th dose dependent rect. 13 1
398 313.67 humidity 80.0 270 < th dose dependent rect. 6 1
402 313.79 humidity 80.0 270 < th dose independent rect. 6 1
408 313.86 wind 1.0 30 > th dose independent rect. 3 17
412 313.91 wind 1.0 10 < th dose dependent rect. 3 2
414 313.92 temperature 20.0 90 > th dose independent rect. 5 14
424 314.19 radiation 10.0 10 < th dose independent rect. 11 1
427 314.35 radiation 40.0 30 < th dose independent rect. 12 8
446 314.73 humidity 80.0 720 > th dose independent rect. 5 2
479 315.04 wind 1.0 30 > th dose independent rect. 24 20
481 315.07 wind 1.0 10 < th dose dependent rect. 3 10
488 315.21 radiation 40.0 90 < th dose independent rect. 21 23
490 315.22 wind 3.0 4320 > th dose independent rect. 8 1
491 315.22 temperature 30.0 90 < th dose independent rect. 13 6
500 315.35 wind 3.0 4320 < th dose independent rect. 8 1
503 315.37 radiation 40.0 30 < th dose independent rect. 5 23
509 315.43 temperature 30.0 30 < th dose independent rect. 3 17
512 315.46 humidity 70.0 270 > th dose dependent rect. 20 1
513 315.47 radiation 40.0 90 < th dose independent rect. 5 14
515 315.49 wind 5.0 10 > th dose independent rect. 24 9
534 315.72 temperature 30.0 90 < th dose independent rect. 5 14
549 315.84 humidity 60.0 90 > th dose independent rect. 13 6
550 315.84 wind 1.0 30 > th dose independent rect. 24 8
553 315.84 wind 1.0 30 > th dose dependent rect. 20 7
555 315.87 atmosphere 1000.0 30 > th dose independent rect. 20 17
557 315.89 temperature 30.0 90 < th dose independent rect. 14 17
558 315.91 humidity 60.0 30 > th dose dependent rect. 20 7
565 315.93 wind 5.0 10 > th dose dependent rect. 24 9
567 315.96 wind 1.0 30 < th dose independent rect. 4 1
572 315.98 temperature 30.0 30 < th dose independent rect. 24 20
573 315.98 humidity 60.0 90 > th dose dependent rect. 19 10
580 316.04 humidity 90.0 14400 > th dose independent rect. 13 1
584 316.06 wind 1.0 30 > th dose independent rect. 14 18
589 316.08 humidity 90.0 30 > th dose dependent rect. 4 1
590 316.08 humidity 80.0 90 > th dose dependent rect. 5 5
594 316.11 temperature 25.0 30 < th dose dependent rect. 4 1
599 316.16 radiation 40.0 30 < th dose independent rect. 24 20
600 316.16 wind 1.0 30 > th dose dependent rect. 20 4
604 316.18 wind 3.0 90 > th dose dependent rect. 6 1
606 316.18 atmosphere 995.0 30 > th dose dependent rect. 20 7
607 316.18 radiation 1.0 14400 < th dose dependent rect. 21 7
609 316.19 radiation 40.0 30 < th dose independent rect. 9 11
611 316.19 humidity 50.0 90 > th dose dependent rect. 13 6
617 316.21 wind 1.0 10 > th dose independent rect. 2 6
620 316.24 atmosphere 1005.0 10 > th dose dependent rect. 13 1
623 316.26 wind 1.0 10 < th dose dependent rect. 24 5
628 316.30 humidity 80.0 270 > th dose independent rect. 20 1
635 316.32 humidity 90.0 90 > th dose dependent rect. 20 3
636 316.33 wind 3.0 14400 < th dose independent rect. 3 1
637 316.33 radiation 40.0 30 > th dose dependent sin 13 NA
639 316.33 radiation 1.0 270 < th dose dependent rect. 5 12
640 316.34 wind 1.0 1440 < th dose independent rect. 5 1
643 316.34 humidity 80.0 90 > th dose independent rect. 5 5
649 316.36 radiation 40.0 30 < th dose independent rect. 9 23
652 316.37 radiation 40.0 30 < th dose independent rect. 3 17
653 316.38 temperature 25.0 30 > th dose independent rect. 7 7
654 316.38 wind 3.0 30 > th dose independent rect. 20 18
656 316.38 wind 1.0 1440 < th dose dependent rect. 4 2
658 316.39 wind 5.0 4320 < th dose dependent rect. 8 1
663 316.42 temperature 25.0 10 > th dose independent rect. 7 9
664 316.42 radiation 40.0 30 < th dose independent rect. 12 20
665 316.42 atmosphere 1005.0 10 < th dose dependent rect. 17 17
666 316.43 wind 1.0 1440 > th dose independent rect. 5 1
668 316.43 precipitation 0.1 1440 < th dose independent rect. 21 5
670 316.43 precipitation 0.1 1440 < th dose dependent rect. 21 5
673 316.44 atmosphere 1005.0 90 < th dose dependent rect. 16 18
682 316.46 temperature 20.0 10 > th dose independent rect. 6 14
685 316.47 atmosphere 1000.0 30 > th dose independent rect. 20 7
686 316.48 wind 3.0 14400 > th dose independent rect. 3 1
691 316.48 wind 1.0 4320 > th dose dependent rect. 8 1
704 316.52 temperature 25.0 30 < th dose independent rect. 4 1
706 316.52 wind 1.0 30 > th dose independent rect. 16 16
711 316.54 wind 7.0 14400 > th dose dependent rect. 22 15
712 316.54 atmosphere 1015.0 270 < th dose dependent rect. 13 18
721 316.56 atmosphere 995.0 30 > th dose dependent rect. 20 9
723 316.57 temperature 15.0 1440 > th dose independent rect. 6 14
724 316.57 temperature 15.0 30 > th dose independent rect. 14 18
730 316.59 radiation 40.0 10 < th dose independent sin 14 NA
732 316.59 atmosphere 1000.0 270 > th dose independent rect. 17 20
766 316.66 radiation 40.0 30 < th dose independent rect. 13 15
770 316.67 radiation 10.0 90 < th dose dependent rect. 5 14
786 316.71 wind 1.0 14400 > th dose dependent rect. 3 1
788 316.72 wind 3.0 14400 < th dose independent rect. 22 7
793 316.73 radiation 40.0 90 < th dose independent rect. 11 23
801 316.74 wind 5.0 14400 < th dose dependent rect. 3 1
802 316.74 humidity 70.0 10 > th dose dependent rect. 20 4
810 316.75 atmosphere 1000.0 30 > th dose independent rect. 20 9
811 316.75 wind 3.0 14400 < th dose independent rect. 19 11
815 316.75 atmosphere 1015.0 10 < th dose dependent rect. 16 16
820 316.76 temperature 30.0 30 < th dose dependent rect. 3 17
821 316.77 temperature 10.0 1440 > th dose independent rect. 21 9
824 316.77 temperature 30.0 1440 < th dose independent rect. 21 9
828 316.77 humidity 50.0 1440 > th dose independent rect. 21 9
834 316.77 atmosphere 995.0 1440 > th dose independent rect. 21 9
835 316.77 radiation 20.0 1440 < th dose independent rect. 21 9
855 316.78 wind 7.0 14400 > th dose dependent rect. 10 1
863 316.79 humidity 90.0 30 > th dose independent rect. 4 1
867 316.79 wind 7.0 14400 > th dose independent rect. 22 15
874 316.80 temperature 15.0 10 > th dose independent rect. 7 23
881 316.82 wind 3.0 14400 < th dose independent rect. 22 15
883 316.83 wind 3.0 14400 > th dose independent rect. 22 7
884 316.83 wind 7.0 14400 < th dose independent rect. 22 15
891 316.84 atmosphere 995.0 30 > th dose independent rect. 3 17
892 316.85 wind 9.0 14400 < th dose independent rect. 12 1
895 316.85 wind 7.0 14400 > th dose dependent rect. 2 11
897 316.86 wind 7.0 14400 > th dose independent rect. 10 1
899 316.86 precipitation 0.1 30 < th dose independent rect. 3 17
903 316.86 precipitation 0.1 30 < th dose dependent rect. 3 17
908 316.87 wind 3.0 14400 > th dose independent rect. 22 15
911 316.88 wind 3.0 30 > th dose independent rect. 20 7
913 316.88 wind 3.0 14400 < th dose independent rect. 24 13
914 316.88 temperature 15.0 90 > th dose independent rect. 15 16
921 316.89 temperature 15.0 270 > th dose independent rect. 21 10
922 316.89 wind 3.0 14400 > th dose independent rect. 24 13
931 316.90 wind 3.0 14400 < th dose independent sin 9 NA
933 316.90 wind 3.0 270 > th dose independent rect. 7 1
934 316.90 wind 3.0 720 < th dose independent rect. 5 4
936 316.90 precipitation 0.1 30 < th dose independent rect. 20 7
939 316.90 precipitation 0.1 30 < th dose dependent rect. 20 7
941 316.90 atmosphere 995.0 270 > th dose dependent rect. 17 10
944 316.91 humidity 80.0 720 > th dose independent rect. 2 5
948 316.91 atmosphere 1000.0 10 > th dose independent rect. 20 20
950 316.91 radiation 40.0 10 < th dose dependent rect. 13 7
961 316.93 wind 7.0 14400 > th dose independent rect. 1 12
962 316.93 wind 7.0 14400 < th dose independent rect. 1 12
973 316.94 temperature 10.0 30 > th dose independent rect. 20 7
974 316.94 temperature 30.0 30 < th dose independent rect. 20 7
975 316.94 humidity 50.0 30 > th dose independent rect. 20 7
979 316.94 radiation 1.0 30 < th dose independent rect. 20 7
988 316.94 temperature 10.0 30 > th dose independent rect. 3 17
990 316.94 atmosphere 1015.0 30 < th dose independent rect. 3 17
992 316.94 radiation 1.0 30 < th dose dependent rect. 20 7