FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0381400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ervatamin C (EC 3.4.22.-) (ERV-C).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0388) R2 : 0.00456
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.118 (0.0816) R2dN8 : 0.00589 R2N8 : 0.00456
σ : 0.73
deviance : 244.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.88 0.708 3.36 0.929 0.219 -0.816 0.977 3.06 0.101 5.82 25.86 1328 -- --
228.63 0.704 3.44 0.185 0.254 -0.607 1.05 -- 0.0178 4.99 22.16 1219 -- --
229.18 0.705 3.36 0.97 0.223 -0.84 -- 3.27 0.11 5.62 25.73 1292 -- --
230.52 0.707 3.43 0.323 0.192 -0.677 -- -- 0.0743 5.56 18.34 6694 -- --
229.46 0.706 3.38 0.964 -- -1.05 -- 4.1 0.0528 -- 26.7 1943 -- --
240.39 0.727 3.47 -0.0462 0.198 -- 0.913 -- -0.123 6.33 -- -- -- --
242.39 0.729 3.47 -0.034 0.204 -- -- -- -0.125 6.94 -- -- -- --
232.11 0.71 3.44 0.269 -- -0.616 -- -- 0.0519 -- 21.22 6393 -- --
231.64 0.709 3.45 -- 0.19 -0.515 -- -- -0.00425 6.17 22.52 6546 -- --
244.57 0.731 3.48 -0.0297 -- -- -- -- -0.121 -- -- -- -- --
242.42 0.728 3.47 -- 0.203 -- -- -- -0.121 6.95 -- -- -- --
233.44 0.712 3.46 -- -- -0.508 -- -- -0.0237 -- 23.4 6397 -- --
244.59 0.73 3.48 -- -- -- -- -- -0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.42 wind 1.0 90 < th dose independent rect. 6 1
2 222.08 temperature 10.0 90 > th dose dependent rect. 8 22
3 222.47 wind 1.0 90 < th dose dependent rect. 6 1
14 224.36 wind 1.0 90 < th dose independent rect. 6 4
23 225.32 atmosphere 1010.0 10 < th dose independent rect. 6 2
25 225.40 wind 5.0 14400 < th dose independent rect. 11 1
29 225.53 wind 5.0 14400 > th dose independent rect. 11 1
30 225.56 wind 3.0 43200 > th dose dependent rect. 20 1
37 225.96 wind 1.0 90 < th dose dependent rect. 6 4
38 225.97 temperature 15.0 90 > th dose dependent rect. 8 13
42 226.14 wind 5.0 43200 < th dose independent rect. 19 2
43 226.22 wind 5.0 43200 > th dose independent rect. 9 7
44 226.26 wind 5.0 43200 > th dose independent rect. 19 2
47 226.27 wind 5.0 43200 > th dose independent rect. 9 13
48 226.29 wind 5.0 43200 < th dose independent rect. 9 7
53 226.37 wind 5.0 43200 > th dose dependent rect. 13 2
58 226.44 temperature 20.0 90 > th dose dependent rect. 8 15
62 226.46 temperature 30.0 1440 < th dose independent rect. 10 6
65 226.46 wind 5.0 43200 > th dose dependent rect. 10 11
66 226.47 wind 5.0 43200 > th dose independent rect. 9 16
70 226.49 wind 5.0 43200 < th dose independent rect. 9 13
88 226.58 temperature 15.0 4320 > th dose independent rect. 7 2
104 226.64 wind 5.0 43200 > th dose independent sin 23 NA
107 226.64 wind 5.0 43200 < th dose independent rect. 9 16
110 226.65 temperature 30.0 1440 < th dose independent rect. 19 21
111 226.66 temperature 30.0 1440 < th dose independent rect. 6 10
113 226.66 wind 9.0 43200 < th dose dependent rect. 20 1
126 226.69 temperature 30.0 1440 < th dose independent rect. 24 16
127 226.69 temperature 30.0 1440 < th dose independent rect. 22 18
142 226.73 temperature 30.0 90 < th dose dependent rect. 6 17
146 226.75 temperature 30.0 1440 > th dose independent rect. 10 6
163 226.77 wind 5.0 43200 > th dose dependent rect. 10 8
169 226.77 temperature 25.0 720 > th dose dependent rect. 17 20
170 226.78 wind 5.0 43200 < th dose independent sin 23 NA
171 226.78 humidity 50.0 14400 > th dose independent rect. 7 2
172 226.78 wind 7.0 43200 < th dose independent rect. 13 3
190 226.80 temperature 30.0 1440 < th dose independent rect. 11 15
197 226.81 temperature 30.0 1440 < th dose independent rect. 11 10
199 226.81 temperature 30.0 1440 < th dose independent rect. 11 12
212 226.82 temperature 30.0 1440 < th dose independent rect. 11 21
213 226.82 temperature 30.0 1440 < th dose independent rect. 14 22
215 226.83 temperature 30.0 1440 < th dose independent sin 20 NA
284 226.90 temperature 30.0 1440 < th dose independent rect. 14 12
293 226.91 wind 5.0 43200 > th dose dependent sin 21 NA
295 226.91 temperature 25.0 1440 > th dose dependent rect. 7 16
297 226.92 temperature 30.0 1440 < th dose independent rect. 14 7
298 226.92 temperature 30.0 1440 < th dose independent rect. 14 9
313 226.92 temperature 25.0 1440 > th dose dependent rect. 7 14
330 226.94 wind 7.0 43200 > th dose independent rect. 14 2
332 226.94 temperature 30.0 1440 < th dose independent rect. 14 4
345 226.94 temperature 30.0 1440 < th dose independent rect. 13 19
347 226.94 temperature 30.0 1440 > th dose independent rect. 14 22
376 226.97 temperature 30.0 1440 > th dose independent rect. 15 2
391 226.97 temperature 25.0 1440 > th dose dependent rect. 15 23
392 226.98 temperature 30.0 1440 > th dose independent rect. 14 5
442 226.99 temperature 30.0 1440 < th dose independent rect. 6 20
467 227.01 temperature 30.0 1440 < th dose independent rect. 7 14
515 227.02 temperature 25.0 1440 > th dose dependent sin 23 NA
542 227.03 temperature 30.0 1440 < th dose independent rect. 24 21
547 227.03 temperature 30.0 1440 < th dose independent rect. 22 23
548 227.03 temperature 30.0 1440 < th dose independent rect. 24 23
562 227.04 temperature 30.0 1440 < th dose independent no NA NA
598 227.05 humidity 70.0 10 > th dose independent rect. 6 2
663 227.07 radiation 1.0 14400 < th dose dependent rect. 4 1
664 227.07 radiation 1.0 14400 < th dose dependent rect. 2 3
673 227.08 atmosphere 1000.0 30 > th dose independent rect. 6 2
679 227.08 wind 5.0 43200 > th dose dependent rect. 5 16
697 227.09 temperature 25.0 1440 > th dose dependent rect. 11 3
705 227.10 temperature 30.0 1440 > th dose independent sin 19 NA
743 227.11 radiation 1.0 1440 < th dose dependent rect. 1 4
757 227.12 wind 9.0 43200 > th dose independent rect. 19 2
778 227.13 temperature 25.0 1440 > th dose dependent no NA NA
780 227.13 temperature 25.0 1440 > th dose dependent rect. 8 6
782 227.13 temperature 25.0 1440 > th dose dependent rect. 22 22
836 227.15 temperature 25.0 1440 > th dose dependent rect. 18 23
862 227.17 temperature 25.0 1440 > th dose dependent rect. 11 23
889 227.19 wind 9.0 43200 > th dose dependent rect. 19 2
927 227.23 wind 9.0 43200 < th dose independent rect. 19 2
939 227.24 precipitation 0.1 14400 < th dose independent rect. 1 6
977 227.24 precipitation 0.1 14400 < th dose dependent rect. 1 6