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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0378700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : U box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0475) R2 : 0.25
β1 : -1.23 (0.175) R2dD : 0.0892 R2D : 0.032
β2 : 0.826 (0.118) R2dC : 0.0896 R2C : 0.124
β3 : -1.08 (0.21) R2dE : 0.0626 R2E : 0.0373
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.521 (0.108) R2dN8 : 0.0611 R2N8 : -0.0153
σ : 0.861
deviance : 342.07
__
_____
C
peak time of C : 10.6
E
wheather : temperature
threshold : 26.7
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
328.98 0.852 3.81 -1.43 0.813 -1.07 -1.15 1.5 -0.585 10.4 26.7 9 -- --
332.12 0.855 3.78 -1.17 0.792 -1.14 -1.58 -- -0.525 10.4 26.9 29 -- --
332.9 0.85 3.82 -1.58 0.833 -0.99 -- 2.27 -0.604 10.7 26.7 3 -- --
342.07 0.861 3.78 -1.23 0.826 -1.08 -- -- -0.521 10.6 26.7 3 -- --
369.9 0.901 3.87 -1.7 -- -1.52 -- 2.11 -0.712 -- 27.3 4 -- --
351.63 0.879 3.72 -0.905 1.03 -- -1.46 -- -0.274 11.3 -- -- -- --
360.68 0.889 3.73 -0.963 1.03 -- -- -- -0.279 11.4 -- -- -- --
376.88 0.904 3.83 -1.35 -- -1.61 -- -- -0.632 -- 27 3 -- --
378.21 0.906 3.73 -- 0.906 -0.655 -- -- -0.299 11.1 26.44 3 -- --
427.5 0.966 3.75 -0.99 -- -- -- -- -0.29 -- -- -- -- --
385.11 0.918 3.7 -- 1.04 -- -- -- -0.172 11.5 -- -- -- --
422.06 0.957 3.78 -- -- -1.22 -- -- -0.409 -- 27 3 -- --
453.35 0.994 3.73 -- -- -- -- -- -0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.26 temperature 20 270 > th dose independent rect. 4 6
3 317.11 wind 3 30 > th dose dependent rect. 7 3
4 317.12 wind 7 270 > th dose independent rect. 7 1
11 317.93 wind 7 270 > th dose dependent rect. 7 1
14 318.13 wind 5 10 > th dose independent rect. 7 4
16 318.22 temperature 10 270 > th dose dependent rect. 15 19
25 319.19 atmosphere 1015 270 < th dose dependent rect. 6 4
35 319.89 temperature 20 30 > th dose dependent rect. 18 16
36 319.90 wind 1 90 > th dose dependent rect. 17 17
39 319.98 wind 7 270 > th dose dependent rect. 3 7
53 320.72 temperature 20 270 > th dose independent rect. 4 15
54 320.81 humidity 80 90 > th dose independent rect. 8 1
69 321.33 radiation 40 14400 < th dose independent rect. 15 1
70 321.40 radiation 40 14400 < th dose independent rect. 15 3
71 321.40 radiation 40 14400 < th dose independent rect. 15 16
72 321.41 temperature 15 10 > th dose dependent rect. 16 21
75 321.46 radiation 40 14400 < th dose independent rect. 15 14
76 321.46 temperature 20 270 > th dose independent rect. 4 17
80 321.65 temperature 20 270 > th dose independent rect. 14 20
87 321.79 humidity 80 43200 > th dose independent rect. 22 1
91 321.86 wind 3 30 > th dose independent rect. 17 17
97 321.97 radiation 40 14400 < th dose independent rect. 15 8
98 321.97 wind 1 43200 < th dose dependent rect. 2 1
99 321.98 radiation 40 14400 < th dose independent rect. 15 6
102 322.04 radiation 20 14400 < th dose independent rect. 17 1
105 322.05 radiation 1 4320 > th dose dependent rect. 18 11
115 322.17 radiation 40 14400 < th dose independent rect. 15 12
125 322.38 radiation 20 14400 < th dose independent rect. 17 12
134 322.66 radiation 1 4320 > th dose dependent rect. 18 1
203 323.35 humidity 80 43200 < th dose independent rect. 22 2
211 323.46 humidity 80 43200 < th dose dependent rect. 1 1
212 323.46 humidity 60 14400 < th dose dependent rect. 17 17
221 323.63 wind 1 43200 < th dose dependent rect. 8 5
225 323.70 radiation 10 4320 > th dose dependent rect. 17 13
239 323.90 wind 5 720 < th dose independent rect. 1 6
244 323.95 radiation 20 14400 < th dose independent rect. 17 10
246 323.96 humidity 80 43200 < th dose dependent rect. 22 6
248 323.97 humidity 60 14400 < th dose independent rect. 18 15
273 324.15 wind 1 43200 > th dose independent rect. 8 2
276 324.19 wind 3 43200 > th dose independent rect. 1 17
299 324.37 wind 7 720 > th dose dependent rect. 22 12
302 324.38 wind 3 10 > th dose dependent rect. 10 1
319 324.49 radiation 10 4320 < th dose dependent rect. 20 9
320 324.51 wind 3 43200 < th dose independent rect. 1 17
322 324.53 wind 5 43200 < th dose dependent rect. 4 15
353 324.68 wind 3 43200 > th dose independent rect. 4 14
361 324.71 radiation 20 14400 < th dose dependent rect. 4 1
388 324.83 wind 7 270 > th dose dependent rect. 9 1
389 324.83 wind 5 43200 < th dose dependent rect. 1 18
393 324.86 humidity 70 14400 < th dose dependent rect. 19 13
395 324.87 wind 1 43200 > th dose dependent rect. 13 19
404 324.90 wind 3 43200 < th dose independent rect. 4 14
418 324.98 wind 7 43200 < th dose dependent rect. 13 19
420 324.99 humidity 70 90 > th dose dependent rect. 8 1
455 325.07 wind 3 30 > th dose dependent rect. 22 13
465 325.09 wind 3 43200 > th dose independent rect. 10 22
516 325.22 radiation 10 14400 < th dose dependent rect. 2 3
525 325.24 wind 3 43200 > th dose dependent rect. 15 14
578 325.39 temperature 15 270 > th dose dependent rect. 4 6
588 325.41 wind 5 43200 < th dose dependent sin 0 NA
592 325.42 humidity 60 43200 < th dose independent rect. 9 1
640 325.51 wind 3 43200 > th dose independent sin 1 NA
676 325.59 wind 1 43200 > th dose independent rect. 2 1
681 325.60 radiation 10 14400 < th dose independent rect. 20 9
687 325.62 humidity 60 43200 > th dose independent rect. 8 2
722 325.67 wind 1 43200 < th dose independent rect. 8 3
740 325.70 humidity 60 14400 > th dose independent rect. 18 15
759 325.73 humidity 50 43200 < th dose independent rect. 11 8
783 325.77 wind 3 43200 < th dose independent rect. 10 21
790 325.78 wind 1 43200 < th dose independent rect. 2 1
804 325.79 wind 3 43200 < th dose independent sin 1 NA
835 325.82 humidity 50 43200 < th dose independent rect. 13 6
841 325.82 radiation 10 43200 < th dose dependent rect. 9 1
847 325.82 wind 1 43200 > th dose dependent rect. 1 18
851 325.83 humidity 50 43200 > th dose independent rect. 14 1
852 325.83 humidity 50 43200 < th dose independent rect. 14 1
853 325.83 humidity 50 43200 > th dose independent rect. 11 8
863 325.84 wind 3 43200 > th dose independent no NA NA
950 325.92 humidity 50 43200 > th dose independent rect. 11 14
957 325.93 humidity 50 43200 > th dose independent rect. 9 6
980 325.94 wind 5 43200 < th dose dependent rect. 4 23
1000 325.96 wind 3 43200 > th dose independent rect. 4 23