Os09g0378300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS).
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Os09g0378300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.59 | 0.464 | 8.57 | 1.6 | 0.851 | 0.71 | 1.32 | 1.92 | 0.047 | 18 | 35.47 | 112 | -- | -- |
| 104.16 | 0.479 | 8.55 | 1.58 | 0.908 | 0.447 | 1.41 | -- | 0.0988 | 17.5 | 40.02 | 81 | -- | -- |
| 101.58 | 0.469 | 8.57 | 1.59 | 0.838 | 0.697 | -- | 1.99 | 0.0461 | 17.9 | 35.02 | 113 | -- | -- |
| 108.83 | 0.486 | 8.56 | 1.59 | 0.911 | 0.643 | -- | -- | 0.074 | 17.7 | 40.09 | 65 | -- | -- |
| 123.98 | 0.519 | 8.59 | 1.44 | -- | 0.93 | -- | 1.41 | -0.158 | -- | 10.02 | 553 | -- | -- |
| 110.58 | 0.493 | 8.55 | 1.58 | 0.947 | -- | 1.38 | -- | 0.0934 | 17 | -- | -- | -- | -- |
| 115.47 | 0.503 | 8.55 | 1.59 | 0.956 | -- | -- | -- | 0.1 | 17 | -- | -- | -- | -- |
| 119.95 | 0.51 | 8.54 | 1.54 | -- | 0.992 | -- | -- | 0.0461 | -- | 2.05 | 625 | -- | -- |
| 172.88 | 0.612 | 8.6 | -- | 0.865 | 0.601 | -- | -- | -0.0383 | 18 | 30 | 125 | -- | -- |
| 163.53 | 0.598 | 8.54 | 1.55 | -- | -- | -- | -- | 0.0757 | -- | -- | -- | -- | -- |
| 181.86 | 0.631 | 8.59 | -- | 0.928 | -- | -- | -- | -0.0766 | 17 | -- | -- | -- | -- |
| 181.67 | 0.628 | 8.6 | -- | -- | 1.04 | -- | -- | -0.196 | -- | 10 | 555 | -- | -- |
| 227.1 | 0.703 | 8.58 | -- | -- | -- | -- | -- | -0.0965 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.47 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 2 | 91.08 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 3 | 91.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 18 | 92.45 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 32 | 93.07 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 86 | 94.02 | temperature | 25.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 131 | 94.70 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 197 | 95.51 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 199 | 95.52 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 227 | 95.74 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 232 | 95.77 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 238 | 95.80 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 242 | 95.81 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 264 | 95.94 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 266 | 95.97 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 298 | 96.14 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 324 | 96.17 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 342 | 96.25 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 356 | 96.30 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 371 | 96.35 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 380 | 96.39 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 390 | 96.47 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 391 | 96.47 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 409 | 96.53 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 414 | 96.55 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 416 | 96.55 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 424 | 96.58 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 425 | 96.58 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 438 | 96.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 468 | 96.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 496 | 96.83 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 500 | 96.85 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 504 | 96.86 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 543 | 97.01 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 548 | 97.04 | radiation | 1.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 554 | 97.06 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 556 | 97.06 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 565 | 97.11 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 573 | 97.14 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 582 | 97.17 | radiation | 40.0 | 270 | > th | dose independent | sin | 11 | NA |
| 589 | 97.20 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 646 | 97.36 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 22 |
| 648 | 97.37 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 649 | 97.37 | humidity | 80.0 | 720 | > th | dose independent | rect. | 16 | 11 |
| 654 | 97.39 | radiation | 40.0 | 90 | > th | dose independent | sin | 7 | NA |
| 681 | 97.40 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 684 | 97.40 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 693 | 97.43 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 9 |
| 694 | 97.43 | humidity | 60.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 705 | 97.48 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 706 | 97.48 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 707 | 97.48 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 711 | 97.49 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 712 | 97.50 | radiation | 40.0 | 90 | < th | dose independent | sin | 7 | NA |
| 713 | 97.50 | radiation | 40.0 | 270 | < th | dose independent | sin | 11 | NA |
| 721 | 97.52 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 728 | 97.53 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 733 | 97.54 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 735 | 97.54 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 736 | 97.54 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 738 | 97.54 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 739 | 97.54 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 740 | 97.54 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 755 | 97.57 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 762 | 97.57 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 766 | 97.59 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 779 | 97.61 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 809 | 97.63 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 822 | 97.67 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 841 | 97.71 | temperature | 15.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 856 | 97.73 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 862 | 97.74 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 874 | 97.77 | humidity | 80.0 | 720 | > th | dose independent | sin | 15 | NA |
| 881 | 97.78 | radiation | 40.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 892 | 97.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 906 | 97.82 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 918 | 97.85 | radiation | 20.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 926 | 97.87 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 15 |
| 935 | 97.89 | radiation | 10.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 973 | 97.93 | radiation | 30.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 996 | 97.97 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 15 |