Os09g0376600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0376600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.26 | 0.734 | 3.75 | 0.3 | 0.371 | -0.772 | 1.29 | 0.244 | -0.0742 | 5.32 | 22.3 | 745 | -- | -- |
| 244.49 | 0.728 | 3.75 | 0.239 | 0.386 | -0.767 | 1.27 | -- | -0.0818 | 5.18 | 22.2 | 745 | -- | -- |
| 248.13 | 0.734 | 3.76 | 0.249 | 0.388 | -0.778 | -- | 0.0382 | -0.0969 | 5.72 | 22.12 | 744 | -- | -- |
| 248.09 | 0.734 | 3.76 | 0.231 | 0.382 | -0.777 | -- | -- | -0.102 | 5.63 | 22.12 | 757 | -- | -- |
| 254.53 | 0.743 | 3.77 | 0.236 | -- | -0.824 | -- | -0.0728 | -0.0942 | -- | 22 | 643 | -- | -- |
| 271.75 | 0.773 | 3.81 | -0.0408 | 0.463 | -- | 1.1 | -- | -0.355 | 6.15 | -- | -- | -- | -- |
| 274.38 | 0.776 | 3.81 | -0.0269 | 0.474 | -- | -- | -- | -0.358 | 6.76 | -- | -- | -- | -- |
| 254.53 | 0.743 | 3.76 | 0.263 | -- | -0.831 | -- | -- | -0.086 | -- | 21.95 | 643 | -- | -- |
| 249.34 | 0.735 | 3.77 | -- | 0.39 | -0.724 | -- | -- | -0.138 | 5.69 | 22.25 | 745 | -- | -- |
| 286.12 | 0.79 | 3.82 | -0.0162 | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
| 274.4 | 0.775 | 3.81 | -- | 0.474 | -- | -- | -- | -0.355 | 6.76 | -- | -- | -- | -- |
| 256.25 | 0.746 | 3.77 | -- | -- | -0.781 | -- | -- | -0.129 | -- | 21.99 | 635 | -- | -- |
| 286.13 | 0.79 | 3.82 | -- | -- | -- | -- | -- | -0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.56 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 2 | 237.12 | humidity | 80.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 4 | 237.26 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 5 | 237.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 8 | 237.74 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 13 | 238.36 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 13 |
| 40 | 239.95 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 56 | 240.88 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 82 | 241.94 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 2 |
| 90 | 242.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 110 | 243.08 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 145 | 244.07 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 4 |
| 151 | 244.25 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 154 | 244.33 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 156 | 244.39 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 164 | 244.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 181 | 244.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 200 | 244.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 216 | 245.15 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 251 | 245.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 302 | 245.88 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 1 |
| 306 | 245.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 323 | 245.99 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 10 |
| 361 | 246.35 | temperature | 20.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 372 | 246.51 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 403 | 246.73 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 404 | 246.73 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 408 | 246.74 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 417 | 246.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 422 | 246.83 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 445 | 246.99 | temperature | 30.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 448 | 247.02 | temperature | 10.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 466 | 247.09 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 472 | 247.11 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 486 | 247.17 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 494 | 247.21 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 495 | 247.21 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 498 | 247.21 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 502 | 247.21 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 504 | 247.21 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 509 | 247.21 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 510 | 247.21 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 512 | 247.21 | wind | 9.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 513 | 247.21 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 518 | 247.21 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 527 | 247.29 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 552 | 247.47 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 566 | 247.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 567 | 247.54 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 577 | 247.59 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 598 | 247.69 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 13 |
| 680 | 248.15 | temperature | 20.0 | 720 | < th | dose independent | sin | 9 | NA |
| 694 | 248.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 710 | 248.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 748 | 248.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 18 |
| 749 | 248.56 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 756 | 248.59 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 784 | 248.72 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 798 | 248.75 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 811 | 248.83 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 882 | 249.11 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 917 | 249.26 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 2 |
| 934 | 249.31 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 13 |
| 942 | 249.34 | temperature | 20.0 | 720 | > th | dose independent | sin | 10 | NA |
| 982 | 249.48 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 1 | 3 |