Os09g0375900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypoxia induced protein conserved region family protein.
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Os09g0375900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypoxia induced protein conserved region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.33 | 0.53 | 11.2 | -0.417 | 3.91 | -1.43 | 2.41 | -1.04 | -0.575 | 8.74 | 77 | 928 | -- | -- |
| 128.75 | 0.528 | 11.2 | -0.489 | 3.9 | -1.43 | 2.2 | -- | -0.574 | 8.73 | 77 | 929 | -- | -- |
| 141.96 | 0.555 | 11.2 | -0.477 | 3.91 | -1.44 | -- | 0.644 | -0.604 | 8.71 | 76.27 | 926 | -- | -- |
| 142.62 | 0.556 | 11.2 | -0.422 | 3.9 | -1.42 | -- | -- | -0.592 | 8.71 | 76.82 | 926 | -- | -- |
| 755.81 | 1.29 | 11.3 | -0.306 | -- | -0.579 | -- | -0.994 | -0.483 | -- | 76.27 | 926 | -- | -- |
| 163.03 | 0.599 | 11.2 | -0.367 | 3.34 | -- | 1.95 | -- | -0.531 | 8.55 | -- | -- | -- | -- |
| 175.25 | 0.62 | 11.2 | -0.307 | 3.34 | -- | -- | -- | -0.532 | 8.51 | -- | -- | -- | -- |
| 599.85 | 1.14 | 11.3 | -0.511 | -- | 2.15 | -- | -- | -0.688 | -- | 74.01 | 658 | -- | -- |
| 147.29 | 0.565 | 11.2 | -- | 3.87 | -1.37 | -- | -- | -0.55 | 8.71 | 77 | 927 | -- | -- |
| 799.09 | 1.32 | 11.3 | -0.293 | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
| 177.73 | 0.624 | 11.2 | -- | 3.34 | -- | -- | -- | -0.498 | 8.52 | -- | -- | -- | -- |
| 587.87 | 1.13 | 11.3 | -- | -- | 2.39 | -- | -- | -0.401 | -- | 74.47 | 697 | -- | -- |
| 801.35 | 1.32 | 11.3 | -- | -- | -- | -- | -- | -0.468 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 3 | 126.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 24 | 127.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 28 | 127.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 42 | 128.00 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 68 | 129.23 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 84 | 130.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 96 | 131.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 101 | 131.21 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 126 | 132.05 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 139 | 132.41 | humidity | 60 | 1440 | > th | dose dependent | rect. | 24 | 15 |
| 148 | 132.63 | humidity | 60 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 166 | 132.91 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 21 |
| 184 | 133.18 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 211 | 133.44 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 253 | 133.79 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 282 | 133.98 | humidity | 70 | 1440 | > th | dose dependent | sin | 3 | NA |
| 349 | 134.39 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 412 | 134.64 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 429 | 134.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 444 | 134.87 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 456 | 134.91 | humidity | 60 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 458 | 134.94 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 505 | 135.09 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 509 | 135.13 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 20 |
| 525 | 135.20 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 22 |
| 550 | 135.26 | humidity | 60 | 720 | > th | dose dependent | no | NA | NA |
| 583 | 135.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 617 | 135.45 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 663 | 135.61 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 703 | 135.72 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 23 |
| 711 | 135.74 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 21 |
| 716 | 135.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 811 | 135.96 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 813 | 135.96 | humidity | 90 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 845 | 136.03 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 849 | 136.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 856 | 136.05 | radiation | 10 | 1440 | > th | dose independent | sin | 2 | NA |
| 922 | 136.15 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 999 | 136.32 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |