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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0375700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0327) R2 : 0.622
β1 : 2.64 (0.12) R2dD : 0.421 R2D : 0.379
β2 : 1.32 (0.0821) R2dC : 0.216 R2C : 0.211
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.3 (0.0697) R2dN8 : 0.0206 R2N8 : -0.0154
σ : 0.614
deviance : 171.81
__
_____
C
peak time of C : 8.47
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.13 0.564 5.46 2.58 1.41 0.471 1.89 0.397 0.102 7.68 25.25 19 -- --
144.83 0.56 5.47 2.48 1.42 0.479 1.92 -- 0.0706 7.71 25.2 23 -- --
153.66 0.577 5.46 2.64 1.42 0.485 -- 0.434 0.0965 7.51 25.2 10 -- --
154.46 0.579 5.47 2.51 1.42 0.507 -- -- 0.0498 7.5 25.27 10 -- --
246 0.734 5.45 2.76 -- 0.473 -- 1.03 0.228 -- 22.8 7 -- --
159.88 0.593 5.42 2.58 1.32 -- 1.93 -- 0.301 8.61 -- -- -- --
171.81 0.614 5.42 2.64 1.32 -- -- -- 0.3 8.47 -- -- -- --
252.56 0.743 5.49 2.45 -- 0.477 -- -- 0.141 -- 22.86 25 -- --
319.26 0.832 5.5 -- 1.51 0.755 -- -- -0.254 7.01 25.7 15 -- --
269.04 0.766 5.45 2.65 -- -- -- -- 0.313 -- -- -- -- --
355.75 0.882 5.48 -- 1.33 -- -- -- 0.00569 8.32 -- -- -- --
401.39 0.936 5.58 -- -- 0.827 -- -- -0.24 -- 22.86 25 -- --
454 0.995 5.52 -- -- -- -- -- 0.0191 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.60 temperature 25.0 10 < th dose independent rect. 2 18
5 141.08 temperature 25.0 10 < th dose independent sin 23 NA
11 141.53 radiation 1.0 1440 > th dose independent rect. 9 1
15 141.91 temperature 25.0 10 < th dose independent rect. 6 14
17 142.12 temperature 25.0 10 < th dose independent rect. 10 10
19 142.15 radiation 1.0 1440 < th dose independent rect. 9 1
20 142.15 radiation 30.0 1440 < th dose dependent rect. 8 1
21 142.15 radiation 1.0 1440 < th dose dependent rect. 9 1
24 142.19 radiation 1.0 1440 > th dose dependent rect. 8 1
33 142.41 temperature 10.0 10 > th dose dependent rect. 3 23
34 142.42 radiation 1.0 1440 < th dose independent rect. 8 4
35 142.42 radiation 1.0 1440 < th dose dependent rect. 8 4
39 142.54 temperature 25.0 10 < th dose independent rect. 24 20
51 142.85 radiation 1.0 1440 > th dose independent rect. 9 3
55 142.94 radiation 1.0 1440 > th dose independent rect. 8 5
101 143.59 temperature 25.0 10 > th dose independent rect. 5 20
116 143.85 radiation 30.0 1440 < th dose independent rect. 8 2
118 143.87 temperature 25.0 10 > th dose independent sin 23 NA
126 144.07 temperature 30.0 10 < th dose dependent rect. 2 18
134 144.25 precipitation 0.1 14400 > th dose dependent rect. 22 8
141 144.36 atmosphere 1005.0 14400 < th dose independent rect. 20 1
157 144.54 precipitation 0.1 14400 < th dose independent rect. 22 8
159 144.54 precipitation 0.1 14400 < th dose dependent rect. 22 8
168 144.62 radiation 30.0 1440 < th dose independent rect. 3 7
169 144.63 atmosphere 1005.0 14400 < th dose dependent rect. 19 1
172 144.65 temperature 25.0 10 > th dose independent rect. 5 13
178 144.68 radiation 30.0 1440 < th dose independent sin 9 NA
181 144.69 radiation 30.0 1440 < th dose independent rect. 18 16
188 144.71 precipitation 0.1 14400 > th dose independent rect. 22 8
190 144.71 radiation 30.0 1440 < th dose dependent rect. 8 5
192 144.73 radiation 30.0 1440 < th dose independent rect. 3 10
199 144.76 atmosphere 1005.0 14400 < th dose independent rect. 9 2
200 144.76 radiation 30.0 1440 < th dose independent rect. 7 6
203 144.76 radiation 30.0 1440 < th dose independent rect. 18 19
227 144.87 radiation 40.0 14400 > th dose independent rect. 7 1
243 144.87 radiation 40.0 14400 > th dose dependent rect. 7 1
279 144.91 radiation 10.0 1440 > th dose dependent rect. 17 17
280 144.92 radiation 20.0 1440 > th dose independent rect. 7 6
281 144.93 radiation 20.0 1440 > th dose independent sin 9 NA
313 144.97 atmosphere 1005.0 14400 > th dose independent rect. 20 2
351 145.19 temperature 20.0 10 > th dose dependent rect. 5 20
354 145.20 radiation 40.0 720 < th dose dependent rect. 7 12
419 145.46 radiation 40.0 43200 < th dose dependent rect. 21 8
420 145.47 atmosphere 1005.0 14400 > th dose independent rect. 9 2
456 145.58 radiation 30.0 720 < th dose independent rect. 7 12
475 145.61 temperature 25.0 10 < th dose independent rect. 2 14
478 145.62 atmosphere 1005.0 14400 > th dose independent rect. 3 1
480 145.62 radiation 20.0 270 < th dose dependent rect. 8 10
514 145.76 temperature 25.0 10 > th dose independent rect. 8 23
519 145.78 wind 1.0 14400 < th dose dependent rect. 2 1
532 145.82 temperature 25.0 10 < th dose independent rect. 22 22
546 145.86 temperature 25.0 10 > th dose independent rect. 22 23
548 145.87 radiation 10.0 1440 > th dose dependent sin 9 NA
559 145.90 temperature 25.0 10 > th dose independent rect. 20 23
560 145.90 atmosphere 1005.0 14400 < th dose dependent sin 17 NA
567 145.92 atmosphere 1005.0 14400 > th dose independent rect. 20 8
595 145.95 temperature 25.0 10 > th dose independent rect. 22 20
606 145.98 humidity 90.0 1440 > th dose independent rect. 12 1
667 146.10 radiation 40.0 43200 > th dose dependent rect. 15 1
685 146.11 humidity 50.0 43200 > th dose independent rect. 3 1
697 146.15 temperature 25.0 10 > th dose independent no NA NA
699 146.15 radiation 30.0 720 < th dose independent rect. 22 21
700 146.15 radiation 10.0 1440 > th dose dependent rect. 7 6
701 146.15 temperature 30.0 10 < th dose dependent rect. 10 10
711 146.16 atmosphere 1005.0 14400 < th dose dependent rect. 23 2
764 146.22 temperature 10.0 43200 > th dose independent rect. 18 3
795 146.25 radiation 30.0 43200 < th dose independent rect. 17 10
808 146.27 temperature 30.0 10 < th dose dependent sin 23 NA
860 146.32 radiation 30.0 720 < th dose independent rect. 6 15
865 146.32 temperature 10.0 43200 < th dose dependent rect. 5 22
898 146.36 temperature 10.0 43200 < th dose independent rect. 6 21
901 146.36 temperature 10.0 43200 < th dose dependent rect. 5 18
906 146.37 temperature 10.0 43200 < th dose dependent rect. 23 4
916 146.38 temperature 10.0 43200 > th dose independent rect. 5 17
937 146.39 temperature 10.0 43200 < th dose independent rect. 5 18
944 146.40 temperature 10.0 43200 > th dose independent sin 17 NA
961 146.40 radiation 40.0 1440 < th dose dependent rect. 3 10
966 146.41 temperature 10.0 43200 < th dose independent rect. 21 6
971 146.41 temperature 10.0 43200 < th dose dependent rect. 10 17
981 146.42 wind 9.0 43200 > th dose dependent rect. 14 4
994 146.43 temperature 10.0 43200 < th dose independent sin 22 NA
995 146.43 temperature 10.0 43200 > th dose independent rect. 12 9