Os09g0375600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os09g0375600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 412.15 | 0.954 | 3.71 | -2.33 | 0.624 | 3.59 | -1.05 | -9.37 | -0.275 | 7.5 | 0.9498 | 285 | 4.05 | 0.481 |
| 426.71 | 0.962 | 3.63 | -1.97 | 0.753 | 2.86 | -0.747 | -- | -0.187 | 7.19 | 0.9764 | 220 | 4.13 | 0.384 |
| 414.35 | 0.948 | 3.71 | -2.31 | 0.627 | 3.54 | -- | -9.28 | -0.259 | 7.39 | 0.8999 | 278 | 4.07 | 0.467 |
| 428.12 | 0.964 | 3.64 | -1.88 | 0.673 | 2.43 | -- | -- | -0.284 | 7.03 | 0.9 | 229 | 4.18 | 0.337 |
| 432.24 | 0.968 | 3.72 | -2.45 | -- | 4.04 | -- | -10.2 | -0.246 | -- | 0.8 | 304 | 4.03 | 0.417 |
| 537.23 | 1.09 | 3.67 | -1.66 | 1.25 | -- | -0.145 | -- | -0.444 | 6.43 | -- | -- | -- | -- |
| 537.28 | 1.09 | 3.67 | -1.67 | 1.25 | -- | -- | -- | -0.443 | 6.41 | -- | -- | -- | -- |
| 447.75 | 0.986 | 3.66 | -1.91 | -- | 2.79 | -- | -- | -0.249 | -- | 0.9342 | 246 | 4.16 | 0.354 |
| 519.01 | 1.06 | 3.6 | -- | 0.716 | 2.27 | -- | -- | -0.107 | 7.1 | 0.827 | 216 | 4.12 | 0.417 |
| 618.61 | 1.16 | 3.69 | -1.63 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 610.53 | 1.16 | 3.63 | -- | 1.23 | -- | -- | -- | -0.257 | 6.48 | -- | -- | -- | -- |
| 542.4 | 1.08 | 3.61 | -- | -- | 2.58 | -- | -- | -0.0495 | -- | 0.9049 | 282 | 4.1 | 0.435 |
| 689.11 | 1.23 | 3.65 | -- | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 428.03 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 2 | 431.80 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 7 | 450.28 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 8 | 450.52 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 9 | 451.07 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 6 |
| 10 | 452.04 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 11 | 452.27 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 13 | 453.55 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 67 | 458.28 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 78 | 458.67 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 80 | 458.70 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 6 |
| 97 | 459.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 100 | 459.43 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 109 | 460.13 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 120 | 460.20 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 123 | 460.45 | humidity | 90 | 90 | > th | dose independent | rect. | 4 | 1 |
| 126 | 460.90 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 182 | 463.75 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 188 | 464.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 191 | 464.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 4 |
| 227 | 464.64 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 2 | 4 |
| 239 | 465.97 | wind | 3 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 245 | 466.50 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 13 |
| 249 | 466.59 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 1 | 6 |
| 284 | 467.29 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 285 | 467.30 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 291 | 467.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 300 | 467.54 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 1 |
| 307 | 467.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 332 | 468.33 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 363 | 468.96 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 366 | 469.10 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 399 | 469.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 426 | 469.65 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 457 | 470.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 548 | 470.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 590 | 471.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 650 | 471.82 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 734 | 473.12 | humidity | 50 | 1440 | < th | dose independent | sin | 11 | NA |
| 791 | 473.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 813 | 473.79 | humidity | 50 | 1440 | > th | dose independent | sin | 11 | NA |
| 891 | 474.42 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 4 | 1 |