Os09g0375100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os09g0375100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.25 | 0.177 | 12.1 | -0.517 | 0.195 | -0.197 | -0.43 | -0.467 | -0.135 | 0.87 | 1000 | 5675 | -- | -- |
| 14.49 | 0.177 | 12.1 | -0.513 | 0.197 | -0.257 | -0.409 | -- | -0.122 | 0.758 | 1000 | 5608 | -- | -- |
| 14.99 | 0.18 | 12.1 | -0.495 | 0.203 | -0.191 | -- | -0.458 | -0.132 | 1.31 | 1000 | 5747 | -- | -- |
| 15.21 | 0.182 | 12.1 | -0.523 | 0.201 | -0.261 | -- | -- | -0.13 | 1.44 | 1000 | 5705 | -- | -- |
| 17.41 | 0.194 | 12.1 | -0.49 | -- | -0.182 | -- | -0.527 | -0.13 | -- | 1000 | 5728 | -- | -- |
| 16.55 | 0.191 | 12.1 | -0.491 | 0.194 | -- | -0.42 | -- | -0.159 | 0.872 | -- | -- | -- | -- |
| 17.25 | 0.195 | 12.1 | -0.476 | 0.199 | -- | -- | -- | -0.158 | 1.44 | -- | -- | -- | -- |
| 17.66 | 0.196 | 12.1 | -0.516 | -- | -0.265 | -- | -- | -0.127 | -- | 999.7 | 5455 | -- | -- |
| 22.16 | 0.219 | 12.1 | -- | 0.189 | -0.214 | -- | -- | -0.0822 | 1.12 | 1000 | 7740 | -- | -- |
| 19.68 | 0.207 | 12.1 | -0.468 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 23.23 | 0.225 | 12.1 | -- | 0.19 | -- | -- | -- | -0.104 | 1.35 | -- | -- | -- | -- |
| 24.42 | 0.23 | 12.1 | -- | -- | -0.214 | -- | -- | -0.0763 | -- | 1000 | 7788 | -- | -- |
| 25.46 | 0.236 | 12.1 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.18 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 2 | 14.19 | atmosphere | 995 | 14400 | > th | dose independent | sin | 12 | NA |
| 4 | 14.20 | atmosphere | 995 | 14400 | < th | dose independent | sin | 12 | NA |
| 5 | 14.20 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 10 | 14.21 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 15 | 14.21 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 20 | 14.22 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 28 | 14.22 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 22 |
| 29 | 14.22 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 11 |
| 32 | 14.23 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 34 | 14.23 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 41 | 14.23 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 69 | 14.23 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 16 | NA |
| 70 | 14.23 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 9 |
| 77 | 14.24 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 81 | 14.24 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 100 | 14.24 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 110 | 14.24 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 1 | 18 |
| 124 | 14.24 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 129 | 14.25 | atmosphere | 995 | 14400 | < th | dose independent | no | NA | NA |
| 130 | 14.25 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 178 | 14.25 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 214 | 14.25 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 2 | 16 |
| 255 | 14.26 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 257 | 14.26 | atmosphere | 995 | 14400 | < th | dose independent | sin | 4 | NA |
| 263 | 14.26 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 10 |
| 286 | 14.26 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 23 | 19 |
| 295 | 14.26 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 22 | 21 |
| 300 | 14.26 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 304 | 14.26 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 312 | 14.26 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 336 | 14.26 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 354 | 14.26 | atmosphere | 995 | 14400 | < th | dose dependent | no | NA | NA |
| 355 | 14.26 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 442 | 14.27 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 445 | 14.27 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 1 | 18 |
| 453 | 14.27 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 3 | 19 |
| 538 | 14.28 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 3 | 16 |
| 581 | 14.28 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 2 | NA |
| 592 | 14.29 | atmosphere | 995 | 14400 | > th | dose independent | sin | 3 | NA |
| 650 | 14.30 | atmosphere | 995 | 14400 | > th | dose independent | sin | 1 | NA |
| 653 | 14.30 | atmosphere | 995 | 14400 | < th | dose independent | sin | 0 | NA |
| 777 | 14.33 | humidity | 90 | 90 | < th | dose independent | rect. | 20 | 21 |
| 784 | 14.34 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 785 | 14.34 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 786 | 14.34 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 794 | 14.34 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 795 | 14.34 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 796 | 14.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 810 | 14.35 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 20 |
| 811 | 14.35 | wind | 5 | 4320 | > th | dose dependent | sin | 13 | NA |
| 813 | 14.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 847 | 14.37 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 883 | 14.37 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 915 | 14.38 | wind | 7 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 991 | 14.39 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 15 |