Os09g0372400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0372400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.46 | 0.212 | 10.3 | 0.813 | 0.39 | -0.612 | 0.215 | 0.264 | 0.112 | 15.9 | 17.7 | 365 | -- | -- |
| 20.51 | 0.211 | 10.3 | 0.774 | 0.376 | -0.597 | 0.23 | -- | 0.108 | 15.9 | 17.57 | 398 | -- | -- |
| 20.56 | 0.211 | 10.3 | 0.847 | 0.39 | -0.612 | -- | 0.434 | 0.122 | 15.9 | 17.78 | 368 | -- | -- |
| 20.69 | 0.212 | 10.3 | 0.767 | 0.378 | -0.604 | -- | -- | 0.0996 | 16.1 | 17.3 | 402 | -- | -- |
| 22.49 | 0.221 | 10.3 | 0.795 | -- | -0.555 | -- | 0.0103 | 0.101 | -- | 16.49 | 1133 | -- | -- |
| 25.77 | 0.238 | 10.3 | 0.616 | 0.218 | -- | 0.217 | -- | -0.00278 | 14.3 | -- | -- | -- | -- |
| 25.94 | 0.238 | 10.3 | 0.622 | 0.22 | -- | -- | -- | -0.00138 | 14.5 | -- | -- | -- | -- |
| 22.49 | 0.221 | 10.3 | 0.793 | -- | -0.563 | -- | -- | 0.101 | -- | 16.3 | 1132 | -- | -- |
| 34.71 | 0.274 | 10.3 | -- | 0.28 | -0.267 | -- | -- | -0.0496 | 15.3 | 18.7 | 336 | -- | -- |
| 28.78 | 0.251 | 10.3 | 0.613 | -- | -- | -- | -- | -0.00684 | -- | -- | -- | -- | -- |
| 36.14 | 0.281 | 10.3 | -- | 0.208 | -- | -- | -- | -0.0707 | 14.4 | -- | -- | -- | -- |
| 36.7 | 0.282 | 10.3 | -- | -- | -0.241 | -- | -- | -0.0316 | -- | 21.2 | 1121 | -- | -- |
| 38.69 | 0.29 | 10.3 | -- | -- | -- | -- | -- | -0.0748 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 5 | 20.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 6 | 20.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 17 | 20.37 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 29 | 20.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 35 | 20.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 56 | 20.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 68 | 20.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 81 | 20.60 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 103 | 20.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 109 | 20.67 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 113 | 20.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 123 | 20.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 157 | 20.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 162 | 20.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 186 | 20.78 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 191 | 20.79 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 196 | 20.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 202 | 20.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 209 | 20.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 226 | 20.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 251 | 20.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 278 | 20.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 298 | 20.87 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 334 | 20.88 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 350 | 20.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 354 | 20.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 391 | 20.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 393 | 20.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 419 | 20.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 429 | 20.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 589 | 20.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 621 | 20.96 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 630 | 20.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 669 | 20.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 670 | 20.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 710 | 20.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 711 | 20.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 717 | 20.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 752 | 21.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 796 | 21.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 817 | 21.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 836 | 21.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 837 | 21.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 943 | 21.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |