Os09g0370200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Electron transport protein SCO1/SenC family protein.
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Os09g0370200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Electron transport protein SCO1/SenC family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.19 | 0.323 | 9.11 | 0.649 | 0.399 | -1.43 | -0.32 | 0.399 | 0.054 | 23.4 | 21.8 | 1394 | -- | -- |
| 47.76 | 0.322 | 9.11 | 0.597 | 0.412 | -1.48 | -0.401 | -- | 0.0502 | 23.4 | 21.8 | 1394 | -- | -- |
| 47.39 | 0.321 | 9.1 | 0.659 | 0.378 | -1.4 | -- | 0.466 | 0.0655 | 23.2 | 21.91 | 1412 | -- | -- |
| 47.73 | 0.322 | 9.12 | 0.509 | 0.408 | -1.41 | -- | -- | 0.0272 | 23.4 | 21.96 | 1363 | -- | -- |
| 55.99 | 0.348 | 9.09 | 0.684 | -- | -1.36 | -- | 0.575 | 0.0777 | -- | 22.1 | 1523 | -- | -- |
| 115.76 | 0.504 | 9.22 | -0.0311 | 0.35 | -- | -0.24 | -- | -0.42 | 22.8 | -- | -- | -- | -- |
| 116 | 0.504 | 9.22 | -0.0214 | 0.352 | -- | -- | -- | -0.42 | 22.8 | -- | -- | -- | -- |
| 56.57 | 0.35 | 9.11 | 0.503 | -- | -1.38 | -- | -- | 0.0304 | -- | 22.05 | 1523 | -- | -- |
| 52.92 | 0.339 | 9.14 | -- | 0.466 | -1.23 | -- | -- | -0.0521 | 23.5 | 22.28 | 1235 | -- | -- |
| 123.66 | 0.52 | 9.21 | -0.0141 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 116.01 | 0.504 | 9.22 | -- | 0.351 | -- | -- | -- | -0.417 | 22.8 | -- | -- | -- | -- |
| 62.48 | 0.368 | 9.13 | -- | -- | -1.24 | -- | -- | -0.0574 | -- | 22.12 | 1517 | -- | -- |
| 123.66 | 0.519 | 9.21 | -- | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 5 | 46.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 8 | 46.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 24 | 46.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 31 | 47.00 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 70 | 47.13 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 262 | 47.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 289 | 48.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 310 | 48.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 358 | 48.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 376 | 48.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 382 | 48.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 504 | 48.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 508 | 48.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 531 | 48.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 662 | 49.55 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 736 | 49.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 793 | 50.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 819 | 50.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 829 | 50.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 939 | 50.54 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 960 | 50.60 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |