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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0369500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.04) R2 : 0.335
β1 : -1.21 (0.157) R2dD : 0.107 R2D : -0.0232
β2 : 2.39 (0.226) R2dC : 0.919 R2C : -1.02
β3 : -2.49 (0.205) R2dE : 1.2 R2E : -0.743
β4 : -7.86 (1.22) R2dD*C : 0.656 R2D*C : -0.872
β5 : 8.39 (1.13) R2dD*E : 0.875 R2D*E : -0.62
γ1 : -0.447 (0.0845) R2dN8 : 0.0553 R2N8 : 0.00114
σ : 0.743
deviance : 250.03
__
_____
C
peak time of C : 22.1
E
wheather : radiation
threshold : 6.356
memory length : 91
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.53
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.03 0.743 3.43 -1.21 2.39 -2.49 -7.86 8.39 -0.447 22.1 6.356 91 8.53 --
296.6 0.808 3.4 -0.758 1.86 -1.71 0.411 -- -0.357 20.7 6.356 91 8.53 --
290.08 0.799 3.4 -0.782 1.82 -1.66 -- 1.22 -0.359 20.6 6.356 91 8.53 --
284.44 0.786 3.41 -0.804 1.62 -1.66 -- -- -0.368 21.1 4.19 83 9.01 --
305.15 0.814 3.34 -0.649 -- -0.916 -- 2.02 -0.316 -- 20.99 547 7.35 --
304.74 0.818 3.34 -0.705 0.838 -- -2.02 -- -0.307 15.7 -- -- -- --
316.95 0.834 3.35 -0.737 0.832 -- -- -- -0.318 15.9 -- -- -- --
316.74 0.829 3.34 -0.738 -- -0.883 -- -- -0.334 -- 60.75 690 8.26 --
298.14 0.804 3.38 -- 2.07 -2.22 -- -- -0.293 22.1 7.916 91 8.21 --
355 0.88 3.35 -0.771 -- -- -- -- -0.34 -- -- -- -- --
331.27 0.851 3.33 -- 0.847 -- -- -- -0.236 15.9 -- -- -- --
331.19 0.848 3.33 -- -- -0.887 -- -- -0.245 -- 78.72 700 8.26 --
370.7 0.899 3.33 -- -- -- -- -- -0.255 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.41 atmosphere 1015.0 270 < th dose dependent rect. 13 2
4 248.95 humidity 90.0 90 < th dose independent rect. 13 5
5 248.96 humidity 90.0 30 < th dose independent rect. 15 3
7 249.68 atmosphere 1015.0 30 < th dose dependent rect. 15 3
8 249.99 wind 9.0 270 < th dose independent rect. 15 22
15 251.02 wind 9.0 270 < th dose independent rect. 16 20
21 251.95 wind 9.0 10 < th dose independent rect. 16 23
22 252.05 wind 9.0 10 < th dose independent rect. 18 21
24 252.12 radiation 40.0 90 < th dose independent rect. 13 5
25 252.30 humidity 50.0 270 > th dose independent rect. 16 20
29 252.70 wind 9.0 90 < th dose independent rect. 18 19
30 252.80 radiation 1.0 90 < th dose independent sin 15 NA
31 252.88 radiation 1.0 90 > th dose independent sin 15 NA
34 253.07 temperature 10.0 30 > th dose dependent rect. 15 3
36 253.13 radiation 10.0 90 < th dose dependent sin 14 NA
40 253.58 precipitation 0.1 270 < th dose independent rect. 16 20
41 253.58 precipitation 0.1 270 < th dose dependent rect. 16 20
44 253.83 precipitation 0.1 270 < th dose independent rect. 12 4
45 253.83 precipitation 0.1 270 < th dose dependent rect. 12 4
46 253.87 temperature 10.0 270 > th dose independent rect. 12 4
48 253.87 atmosphere 1015.0 270 < th dose independent rect. 12 4
49 253.87 temperature 10.0 270 > th dose independent rect. 16 20
52 253.95 atmosphere 995.0 270 > th dose independent rect. 16 20
57 254.20 humidity 50.0 90 > th dose independent rect. 16 23
65 254.65 humidity 50.0 90 > th dose independent rect. 18 19
66 254.67 precipitation 0.1 90 < th dose independent rect. 18 19
67 254.67 precipitation 0.1 90 < th dose dependent rect. 18 19
68 254.87 radiation 1.0 270 > th dose independent rect. 12 4
69 254.90 temperature 10.0 1440 > th dose independent rect. 16 3
74 254.90 temperature 10.0 1440 > th dose independent rect. 19 21
77 254.92 wind 1.0 270 > th dose independent rect. 12 4
84 254.96 temperature 10.0 90 > th dose independent rect. 18 19
85 254.96 atmosphere 995.0 90 > th dose independent rect. 18 19
86 254.98 radiation 1.0 30 > th dose independent rect. 15 4
97 255.01 radiation 1.0 90 > th dose independent rect. 13 16
101 255.06 atmosphere 995.0 270 > th dose independent rect. 12 4
114 255.48 humidity 90.0 30 < th dose dependent rect. 15 3
119 255.67 radiation 1.0 90 > th dose independent rect. 13 6
133 255.78 atmosphere 1010.0 270 < th dose independent rect. 7 4
137 255.92 temperature 10.0 270 > th dose dependent rect. 6 6
140 255.97 temperature 10.0 1440 > th dose independent rect. 14 5
144 255.97 temperature 10.0 1440 > th dose independent rect. 19 19
147 255.97 atmosphere 995.0 1440 > th dose independent rect. 19 19
160 256.20 temperature 20.0 30 > th dose independent rect. 15 3
163 256.29 humidity 50.0 30 > th dose independent rect. 18 21
164 256.30 precipitation 0.1 30 < th dose independent rect. 18 21
165 256.30 precipitation 0.1 30 < th dose dependent rect. 18 21
166 256.34 precipitation 0.1 30 < th dose independent rect. 15 3
167 256.34 precipitation 0.1 30 < th dose dependent rect. 15 3
171 256.37 humidity 50.0 270 > th dose independent rect. 12 4
174 256.43 humidity 50.0 270 > th dose independent rect. 13 2
175 256.46 atmosphere 995.0 30 > th dose independent rect. 18 21
176 256.50 temperature 10.0 30 > th dose independent rect. 15 3
178 256.50 atmosphere 1010.0 30 < th dose independent rect. 15 3
180 256.50 temperature 10.0 30 > th dose independent rect. 18 21
189 256.78 wind 1.0 30 > th dose independent rect. 15 3
190 256.81 temperature 10.0 270 > th dose dependent rect. 7 4
198 257.01 wind 1.0 30 > th dose dependent rect. 13 5
200 257.05 wind 9.0 270 < th dose independent rect. 12 4
227 257.51 wind 9.0 270 < th dose independent rect. 7 14
235 257.64 wind 7.0 270 < th dose independent rect. 6 6
240 257.76 humidity 90.0 90 < th dose dependent rect. 13 5
243 257.82 temperature 10.0 90 > th dose dependent rect. 13 5
248 257.98 radiation 40.0 10 < th dose independent rect. 15 3
249 257.98 temperature 10.0 270 > th dose dependent rect. 13 3
291 258.69 radiation 40.0 270 < th dose independent rect. 13 2
292 258.74 wind 7.0 10 < th dose independent rect. 8 7
294 258.82 wind 9.0 30 < th dose independent rect. 15 3
295 258.90 atmosphere 995.0 30 > th dose independent rect. 15 3
297 258.97 temperature 30.0 270 < th dose independent rect. 11 5
324 259.39 temperature 30.0 270 < th dose independent rect. 16 19
340 259.57 temperature 10.0 10 > th dose dependent rect. 8 7
358 259.90 humidity 50.0 270 > th dose independent rect. 16 10
359 259.92 temperature 10.0 90 > th dose dependent rect. 18 19
366 260.01 temperature 10.0 30 > th dose dependent rect. 18 21
367 260.03 radiation 30.0 270 < th dose independent rect. 16 10
387 260.27 temperature 10.0 1440 > th dose independent rect. 16 1
391 260.27 temperature 10.0 1440 > th dose independent rect. 17 23
396 260.30 temperature 30.0 270 < th dose independent rect. 13 1
397 260.37 temperature 10.0 270 > th dose independent rect. 16 10
399 260.37 temperature 10.0 270 > th dose independent rect. 2 14
400 260.37 atmosphere 1015.0 270 < th dose independent rect. 2 14
424 260.87 wind 1.0 270 > th dose independent rect. 16 19
431 261.02 atmosphere 995.0 270 > th dose independent rect. 16 10
432 261.03 precipitation 0.1 270 < th dose independent rect. 16 10
433 261.03 precipitation 0.1 270 < th dose dependent rect. 16 10
447 261.19 precipitation 0.1 270 < th dose independent rect. 2 14
448 261.19 precipitation 0.1 270 < th dose dependent rect. 2 14
452 261.22 atmosphere 995.0 30 > th dose independent rect. 16 23
459 261.27 wind 7.0 270 < th dose independent rect. 7 4
461 261.27 temperature 10.0 10 > th dose dependent rect. 8 5
467 261.29 temperature 15.0 270 > th dose independent rect. 6 6
472 261.33 wind 9.0 270 < th dose independent rect. 16 10
476 261.43 radiation 1.0 270 > th dose independent rect. 11 19
477 261.44 wind 1.0 270 > th dose dependent rect. 11 5
500 261.64 temperature 15.0 270 > th dose independent rect. 7 4
510 261.72 humidity 50.0 10 > th dose independent rect. 15 1
539 261.87 radiation 40.0 90 < th dose dependent rect. 13 4
555 261.98 humidity 90.0 30 < th dose independent rect. 15 1
573 262.20 temperature 10.0 30 > th dose independent rect. 15 1
577 262.20 precipitation 0.1 30 < th dose independent rect. 15 1
579 262.20 temperature 10.0 30 > th dose independent rect. 16 23
580 262.20 precipitation 0.1 30 < th dose dependent rect. 15 1
590 262.23 atmosphere 1000.0 30 > th dose independent rect. 15 1
594 262.29 wind 1.0 30 > th dose independent rect. 15 1
596 262.31 temperature 10.0 30 > th dose dependent rect. 15 1
597 262.32 radiation 1.0 270 > th dose independent rect. 7 4
608 262.46 atmosphere 995.0 270 > th dose independent rect. 2 14
610 262.47 precipitation 0.1 30 < th dose independent rect. 16 23
611 262.47 precipitation 0.1 30 < th dose dependent rect. 16 23
613 262.50 wind 1.0 270 > th dose independent rect. 16 10
620 262.56 radiation 1.0 270 > th dose independent rect. 18 18
625 262.63 temperature 30.0 30 < th dose independent rect. 15 1
663 262.98 radiation 1.0 30 > th dose independent rect. 15 1
675 263.03 humidity 90.0 10 < th dose dependent rect. 13 6
685 263.10 wind 1.0 270 > th dose dependent rect. 13 1
707 263.19 wind 1.0 90 > th dose independent rect. 18 19
716 263.29 radiation 40.0 10 < th dose independent rect. 15 1
717 263.29 humidity 70.0 270 > th dose independent rect. 21 10
719 263.30 radiation 40.0 270 < th dose dependent rect. 16 10
739 263.39 radiation 20.0 270 < th dose independent rect. 21 10
743 263.47 wind 1.0 30 > th dose dependent rect. 15 3
759 263.60 atmosphere 1015.0 90 < th dose independent rect. 18 19
760 263.61 radiation 1.0 270 > th dose independent rect. 5 7
774 263.71 humidity 50.0 10 > th dose independent rect. 15 3
777 263.73 wind 9.0 30 < th dose independent rect. 15 1
797 263.90 precipitation 0.1 270 < th dose independent rect. 7 14
798 263.90 precipitation 0.1 270 < th dose dependent rect. 7 14
819 264.09 temperature 10.0 270 > th dose independent rect. 21 10
820 264.09 temperature 30.0 270 < th dose independent rect. 21 10
821 264.09 humidity 50.0 270 > th dose independent rect. 21 10
823 264.09 atmosphere 995.0 270 > th dose independent rect. 21 10
825 264.09 temperature 10.0 270 > th dose independent rect. 7 14
828 264.15 wind 9.0 270 < th dose independent rect. 21 10
843 264.27 atmosphere 995.0 270 > th dose independent rect. 7 14
851 264.35 radiation 40.0 270 < th dose dependent rect. 21 10
878 264.44 precipitation 0.1 270 < th dose independent rect. 21 10
880 264.44 precipitation 0.1 270 < th dose dependent rect. 21 10
885 264.47 humidity 50.0 270 > th dose independent rect. 2 14
890 264.51 humidity 90.0 90 < th dose independent rect. 7 6
900 264.57 atmosphere 1015.0 90 < th dose dependent rect. 8 5
914 264.72 atmosphere 1015.0 30 < th dose independent rect. 18 21
917 264.77 temperature 20.0 270 > th dose independent rect. 8 2
918 264.79 wind 9.0 270 < th dose dependent rect. 13 3
935 264.88 radiation 1.0 270 > th dose independent rect. 8 2
947 264.98 radiation 40.0 10 < th dose independent rect. 12 6
949 265.01 precipitation 0.1 270 < th dose independent rect. 6 6
951 265.01 radiation 40.0 90 < th dose independent rect. 13 18
952 265.01 precipitation 0.1 270 < th dose dependent rect. 6 6
967 265.11 precipitation 0.1 270 < th dose independent rect. 12 18
968 265.11 precipitation 0.1 270 < th dose dependent rect. 12 18
970 265.13 humidity 50.0 270 > th dose independent rect. 7 14
986 265.26 humidity 50.0 270 > th dose independent rect. 6 6