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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0368900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF632 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0368) R2 : 0.0971
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.14 (0.45) R2dE : 0.0965 R2E : 0.0967
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0293 (0.0774) R2dN8 : 0.000372 R2N8 : 0.000566
σ : 0.691
deviance : 220.06
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 5.253
memory length : 152
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.8
open length of G : 1.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
204.47 0.672 2.96 -0.391 0.106 -13.8 -0.79 -67.2 -0.0277 16.6 6.408 75 13.1 0.765
236.52 0.716 3.03 -0.194 0.161 0.631 -1.1 -- -0.0505 16.1 9.684 88 11.2 1.31
205.77 0.668 2.96 -0.406 0.0913 -13.6 -- -66.9 -0.0343 14.9 6.331 74 13.1 0.75
227.27 0.702 3.05 -0.432 0.11 2.06 -- -- -0.0827 14.5 5.78 270 12.1 1.96
206.42 0.669 2.96 -0.405 -- -13.7 -- -67.2 -0.035 -- 6.322 74 13.1 0.746
236.9 0.722 3.04 -0.216 0.168 -- -1.16 -- -0.0595 16.1 -- -- -- --
240.5 0.726 3.04 -0.228 0.166 -- -- -- -0.066 14.8 -- -- -- --
220.09 0.691 3.04 -0.12 -- 3.07 -- -- -0.0417 -- 5.2 152 12.7 1.31
220.37 0.691 3.02 -- 0.0733 3.3 -- -- 0.0376 15.1 5.499 158 12.8 1.25
242.11 0.727 3.04 -0.235 -- -- -- -- -0.0702 -- -- -- -- --
241.88 0.728 3.03 -- 0.171 -- -- -- -0.0405 14.8 -- -- -- --
220.06 0.691 3.03 -- -- 3.14 -- -- -0.0293 -- 5.253 152 12.8 1.25
243.57 0.728 3.03 -- -- -- -- -- -0.0441 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.19 wind 7 10 > th dose independent rect. 13 1
3 208.42 wind 7 90 > th dose independent rect. 13 1
5 209.05 wind 7 90 > th dose dependent rect. 13 1
98 218.43 temperature 30 90 < th dose dependent rect. 12 4
108 218.95 temperature 30 270 < th dose dependent rect. 12 1
111 219.05 radiation 1 90 < th dose independent rect. 11 3
112 219.05 radiation 1 90 < th dose dependent rect. 11 3
117 219.16 atmosphere 1005 30 > th dose independent rect. 13 3
120 219.33 radiation 1 10 < th dose independent rect. 13 1
130 219.33 radiation 1 10 < th dose dependent rect. 13 1
143 219.38 atmosphere 1005 270 > th dose independent rect. 11 3
144 219.39 temperature 30 10 < th dose dependent rect. 12 4
165 219.58 humidity 80 90 > th dose dependent rect. 12 1
167 219.68 humidity 80 90 > th dose independent rect. 12 3
180 220.09 humidity 80 90 > th dose independent rect. 12 1
211 220.80 atmosphere 1005 30 > th dose independent rect. 13 1
275 222.36 radiation 10 10 > th dose independent rect. 6 1
301 222.36 radiation 10 10 > th dose dependent rect. 6 1
336 222.56 temperature 20 90 < th dose dependent rect. 12 4
339 222.63 temperature 20 10 < th dose dependent rect. 12 5
345 222.77 temperature 20 90 < th dose dependent rect. 14 2
349 222.82 temperature 20 90 < th dose independent rect. 14 2
355 222.90 temperature 30 270 < th dose independent rect. 11 14
388 223.47 wind 1 30 > th dose dependent rect. 13 12
415 223.91 temperature 25 270 < th dose independent rect. 11 3
448 224.33 radiation 40 1440 < th dose dependent rect. 18 3
496 224.64 temperature 25 270 < th dose independent rect. 10 5
500 224.71 radiation 40 1440 < th dose dependent rect. 18 6
504 224.74 atmosphere 1005 30 > th dose independent rect. 15 1
506 224.74 humidity 60 90 > th dose dependent rect. 12 4
520 224.82 radiation 30 10 > th dose independent rect. 13 1
525 224.85 radiation 20 90 < th dose dependent rect. 12 4
528 224.87 atmosphere 1000 30 > th dose dependent rect. 13 3
538 224.95 radiation 20 270 < th dose independent rect. 13 1
541 224.96 atmosphere 1005 10 > th dose independent rect. 6 11
544 224.97 atmosphere 1005 30 > th dose dependent rect. 15 1
553 225.02 temperature 30 270 < th dose independent rect. 18 23
564 225.07 atmosphere 1000 270 > th dose dependent rect. 11 3
576 225.11 radiation 40 270 < th dose dependent rect. 11 3
593 225.21 temperature 30 90 < th dose dependent rect. 23 17
605 225.32 radiation 20 270 < th dose dependent rect. 13 1
616 225.42 wind 3 30 < th dose dependent rect. 18 1
617 225.42 humidity 70 10 > th dose dependent rect. 12 4
618 225.45 atmosphere 1005 30 > th dose independent rect. 24 16
661 225.66 radiation 20 90 < th dose independent rect. 12 4
676 225.75 humidity 80 10 > th dose independent rect. 14 1
687 225.80 radiation 10 43200 > th dose independent rect. 16 1
688 225.80 humidity 60 10 > th dose independent rect. 13 3
728 225.94 wind 3 270 > th dose independent rect. 10 14
736 226.02 temperature 30 90 < th dose independent rect. 23 17
739 226.03 wind 3 90 < th dose dependent rect. 16 1
742 226.05 radiation 1 1440 < th dose independent rect. 18 11
754 226.10 radiation 1 1440 > th dose independent rect. 18 11
761 226.12 atmosphere 1015 43200 > th dose independent rect. 13 5
766 226.13 radiation 40 1440 < th dose dependent rect. 18 10
775 226.18 atmosphere 1015 43200 < th dose independent rect. 14 3
783 226.23 atmosphere 1005 10 < th dose independent rect. 5 1
796 226.24 radiation 10 43200 > th dose independent rect. 16 15
807 226.28 humidity 60 10 > th dose independent rect. 13 1
810 226.29 atmosphere 1015 43200 < th dose independent rect. 13 6
813 226.29 atmosphere 1005 90 > th dose independent rect. 11 10
815 226.30 wind 1 30 < th dose independent rect. 17 1
854 226.31 wind 3 90 > th dose dependent rect. 12 9
860 226.33 radiation 40 270 < th dose independent rect. 11 3
868 226.35 humidity 70 90 < th dose independent rect. 17 1
879 226.40 temperature 20 30 > th dose independent rect. 13 1
884 226.41 temperature 25 270 > th dose dependent rect. 13 23
895 226.45 radiation 10 43200 < th dose dependent rect. 17 1
913 226.49 temperature 30 270 < th dose independent rect. 3 12
918 226.51 radiation 20 10 < th dose independent rect. 12 4
922 226.52 radiation 20 43200 < th dose dependent rect. 16 7
927 226.53 radiation 10 43200 > th dose dependent rect. 16 1
929 226.53 radiation 20 43200 < th dose dependent rect. 16 3
939 226.53 radiation 20 43200 < th dose dependent rect. 16 11
950 226.54 wind 1 10 > th dose dependent rect. 23 17
960 226.57 wind 5 90 > th dose independent rect. 12 12
968 226.58 radiation 20 43200 > th dose independent rect. 14 17
994 226.60 radiation 20 43200 > th dose independent rect. 14 3