Os09g0368500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polyamine oxidase precursor (EC 1.5.3.11).
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Os09g0368500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polyamine oxidase precursor (EC 1.5.3.11).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 338.02 | 0.864 | 3.12 | 0.176 | 0.0852 | 0.545 | 1.73 | -1.85 | -0.119 | 11.4 | 19.9 | 1091 | -- | -- |
| 345.31 | 0.865 | 3.16 | 0.065 | 0.0534 | 0.895 | 1.34 | -- | -0.172 | 11.1 | 19.8 | 1081 | -- | -- |
| 347.03 | 0.868 | 3.14 | 0.219 | 0.227 | 0.514 | -- | -1.86 | -0.171 | 14 | 19.7 | 1458 | -- | -- |
| 349.46 | 0.871 | 3.17 | 0.0513 | 0.201 | 1.23 | -- | -- | -0.167 | 14.4 | 18.8 | 1481 | -- | -- |
| 347.25 | 0.868 | 3.12 | 0.22 | -- | 0.745 | -- | -2.28 | -0.134 | -- | 18.5 | 1487 | -- | -- |
| 359.87 | 0.889 | 3.2 | -0.415 | 0.158 | -- | 1.32 | -- | -0.34 | 11.6 | -- | -- | -- | -- |
| 365.63 | 0.895 | 3.2 | -0.355 | 0.239 | -- | -- | -- | -0.331 | 15.1 | -- | -- | -- | -- |
| 352.02 | 0.874 | 3.16 | 0.0433 | -- | 1.22 | -- | -- | -0.168 | -- | 18.8 | 1465 | -- | -- |
| 349.46 | 0.871 | 3.17 | -- | 0.214 | 1.19 | -- | -- | -0.169 | 14.8 | 18.7 | 1481 | -- | -- |
| 368.89 | 0.897 | 3.2 | -0.366 | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
| 368.96 | 0.899 | 3.19 | -- | 0.246 | -- | -- | -- | -0.291 | 15.1 | -- | -- | -- | -- |
| 352.06 | 0.874 | 3.17 | -- | -- | 1.2 | -- | -- | -0.175 | -- | 18.73 | 1465 | -- | -- |
| 372.42 | 0.901 | 3.19 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 330.82 | humidity | 50.0 | 90 | < th | dose independent | rect. | 12 | 2 |
| 3 | 331.32 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 7 | 331.53 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 2 |
| 9 | 331.76 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 15 | 332.15 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 16 | 332.18 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 22 | 332.57 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 25 | 332.70 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 33 | 333.20 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 45 | 333.78 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 54 | 334.01 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 62 | 334.23 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 74 | 334.52 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 79 | 334.81 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 81 | 334.88 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 83 | 334.93 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 88 | 335.10 | temperature | 20.0 | 720 | > th | dose independent | sin | 16 | NA |
| 96 | 335.36 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 126 | 336.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 127 | 336.05 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 134 | 336.31 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 16 | 2 |
| 164 | 336.97 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 165 | 336.97 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 170 | 337.09 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 172 | 337.11 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 176 | 337.15 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 188 | 337.26 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 202 | 337.44 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 3 |
| 229 | 337.63 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 233 | 337.64 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 240 | 337.69 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 248 | 337.70 | temperature | 15.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 259 | 337.78 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 272 | 337.88 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 19 |
| 289 | 337.99 | temperature | 20.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 291 | 338.00 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 310 | 338.09 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 329 | 338.19 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 336 | 338.23 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 359 | 338.36 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 370 | 338.42 | temperature | 20.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 371 | 338.42 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 454 | 338.71 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 461 | 338.73 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 462 | 338.73 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 8 | 4 |
| 474 | 338.77 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 13 |
| 478 | 338.80 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 510 | 338.91 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 590 | 339.15 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 632 | 339.27 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 648 | 339.32 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 681 | 339.42 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 684 | 339.43 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 775 | 339.63 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 797 | 339.68 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 800 | 339.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 843 | 339.75 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 849 | 339.77 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 12 | 3 |