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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0368200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polyamine oxidase precursor (EC 1.5.3.11).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0377) R2 : 0.000382
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0331 (0.0793) R2dN8 : 0.000493 R2N8 : 0.000382
σ : 0.709
deviance : 231.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.58 0.701 2.6 1.51 0.109 -3.74 -0.145 21.8 0.0503 11.5 1000 36 -- --
229.27 0.711 2.86 0.0639 0.136 0.116 -0.0535 -- 0.0516 11.8 1000 36 -- --
222.65 0.695 2.6 1.51 0.112 -3.74 -- 21.9 0.0525 11.9 999.9 34 -- --
228.16 0.708 2.85 0.0769 0.129 0.163 -- -- 0.0749 11.9 1003 56 -- --
223.41 0.696 2.6 1.52 -- -3.82 -- 22.3 0.0493 -- 1000 44 -- --
229.64 0.71 2.86 0.0843 0.139 -- -0.0432 -- 0.0439 11.9 -- -- -- --
229.65 0.71 2.86 0.0827 0.139 -- -- -- 0.0438 12 -- -- -- --
229.2 0.705 2.86 0.0738 -- 0.176 -- -- 0.0759 -- 1003 55 -- --
228.25 0.704 2.85 -- 0.131 0.171 -- -- 0.0694 11.8 1003 55 -- --
230.87 0.71 2.86 0.0784 -- -- -- -- 0.0418 -- -- -- -- --
229.83 0.709 2.86 -- 0.138 -- -- -- 0.0345 12 -- -- -- --
229.34 0.705 2.86 -- -- 0.178 -- -- 0.0682 -- 1003 55 -- --
231.03 0.709 2.87 -- -- -- -- -- 0.0331 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 208.06 wind 1.0 30 < th dose independent rect. 4 1
2 208.10 wind 1.0 30 < th dose dependent rect. 4 1
4 208.14 precipitation 0.1 10 > th dose independent rect. 3 1
8 208.14 precipitation 0.1 10 > th dose dependent rect. 3 1
15 210.15 atmosphere 1000.0 720 < th dose dependent rect. 22 1
16 210.28 atmosphere 1000.0 90 < th dose independent rect. 23 11
26 211.63 atmosphere 1000.0 720 < th dose independent rect. 22 3
27 212.05 atmosphere 1000.0 10 < th dose independent rect. 22 13
28 212.07 atmosphere 1000.0 720 < th dose independent rect. 22 1
35 212.22 atmosphere 1000.0 270 < th dose independent rect. 23 9
37 212.27 atmosphere 1000.0 90 < th dose independent rect. 19 15
43 212.39 atmosphere 1000.0 10 < th dose independent rect. 20 15
90 213.47 atmosphere 1000.0 90 < th dose dependent rect. 23 11
91 213.59 atmosphere 1000.0 10 < th dose independent rect. 8 2
93 213.60 atmosphere 1000.0 90 < th dose independent rect. 8 1
107 213.78 atmosphere 1000.0 10 < th dose independent rect. 6 5
109 213.79 atmosphere 1000.0 270 < th dose independent rect. 6 1
123 213.96 atmosphere 1000.0 10 < th dose independent rect. 4 7
142 214.20 atmosphere 1000.0 10 < th dose independent rect. 2 9
162 214.54 atmosphere 1000.0 90 < th dose dependent rect. 9 1
175 214.63 wind 1.0 270 < th dose dependent rect. 24 1
204 215.09 atmosphere 1000.0 270 < th dose dependent rect. 21 13
205 215.13 atmosphere 1000.0 10 < th dose independent sin 7 NA
208 215.15 atmosphere 1000.0 10 > th dose independent sin 7 NA
210 215.17 atmosphere 1000.0 90 < th dose independent sin 8 NA
216 215.20 atmosphere 1000.0 90 > th dose independent sin 8 NA
221 215.23 atmosphere 1000.0 30 < th dose dependent rect. 6 5
232 215.33 atmosphere 1000.0 270 < th dose dependent rect. 6 1
239 215.40 wind 9.0 10 > th dose independent rect. 18 1
243 215.40 wind 9.0 10 > th dose dependent rect. 18 1
251 215.48 wind 9.0 90 < th dose independent sin 15 NA
281 215.83 wind 1.0 10 < th dose independent rect. 3 6
297 215.97 atmosphere 1000.0 30 < th dose dependent rect. 4 7
305 216.05 wind 9.0 90 > th dose dependent rect. 16 18
329 216.10 humidity 50.0 10 < th dose independent rect. 11 1
421 216.10 humidity 50.0 10 < th dose dependent rect. 11 1
523 216.22 wind 9.0 90 > th dose independent rect. 16 2
526 216.25 atmosphere 1000.0 30 < th dose dependent rect. 18 17
538 216.38 wind 9.0 90 > th dose independent rect. 16 18
555 216.41 wind 9.0 90 > th dose independent sin 15 NA
558 216.45 wind 9.0 90 > th dose independent sin 12 NA
560 216.45 wind 9.0 90 < th dose independent sin 12 NA
574 216.61 wind 9.0 90 > th dose dependent sin 12 NA
583 216.73 atmosphere 1000.0 30 < th dose dependent rect. 2 9
649 217.06 wind 9.0 90 > th dose dependent sin 14 NA
673 217.32 humidity 70.0 90 < th dose independent rect. 16 1
675 217.38 precipitation 0.1 10 > th dose independent rect. 3 5
701 217.39 precipitation 0.1 10 > th dose dependent rect. 3 5
731 217.47 wind 1.0 10 < th dose dependent rect. 2 7
734 217.49 atmosphere 1005.0 90 < th dose dependent rect. 1 3
741 217.55 radiation 40.0 90 > th dose dependent sin 11 NA
787 217.98 atmosphere 1000.0 270 < th dose dependent sin 9 NA
806 218.09 atmosphere 1000.0 270 > th dose independent sin 11 NA
830 218.23 radiation 1.0 1440 < th dose independent rect. 14 2
851 218.24 atmosphere 1005.0 10 < th dose dependent rect. 1 4
870 218.27 wind 9.0 90 > th dose independent rect. 12 7
889 218.29 radiation 1.0 1440 > th dose independent rect. 14 2
942 218.55 radiation 40.0 90 > th dose dependent rect. 8 3
977 218.68 wind 1.0 10 < th dose independent rect. 3 10
980 218.69 wind 1.0 270 < th dose independent rect. 23 2