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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0367700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GST6 protein (EC 2.5.1.18).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.43 (0.0616) R2 : 0.186
β1 : -0.0246 (0.242) R2dD : 2.59e-05 R2D : 5.69e-05
β2 : 0.629 (0.155) R2dC : 0.0294 R2C : 0.0235
β3 : 1.56 (0.324) R2dE : 0.0543 R2E : 0.0984
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.05 (0.877) R2dD*E : 0.0567 R2D*E : 0.109
γ1 : 0.0665 (0.133) R2dN8 : 0.000632 R2N8 : -0.00367
σ : 1.12
deviance : 580.36
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_____
C
peak time of C : 16.7
E
wheather : temperature
threshold : 19.31
memory length : 451
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 23.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
579.97 1.13 3.44 -0.0627 0.595 1.63 0.631 -4.03 0.0481 16.6 19.37 451 23 --
601.19 1.14 3.44 -0.412 0.441 1.78 1.34 -- 0.125 17.5 20.6 797 23.6 --
580.36 1.12 3.43 -0.0246 0.629 1.56 -- -4.05 0.0665 16.7 19.31 451 23.8 --
604.98 1.15 3.45 -0.396 0.581 2.27 -- -- 0.0326 16.5 19.4 528 22.8 --
600.71 1.14 3.43 -0.0679 -- 1.56 -- -4.08 0.0404 -- 19 515 23.7 --
668.97 1.21 3.53 -0.836 0.611 -- -0.214 -- -0.248 14.7 -- -- -- --
669.08 1.21 3.54 -0.842 0.614 -- -- -- -0.249 14.8 -- -- -- --
616.77 1.16 3.44 -0.293 -- 2.02 -- -- 0.106 -- 20.6 787 22.2 --
607.71 1.15 3.45 -- 0.553 2.53 -- -- 0.103 17 19.3 546 22.7 --
690.85 1.23 3.54 -0.868 -- -- -- -- -0.265 -- -- -- -- --
687.74 1.23 3.51 -- 0.63 -- -- -- -0.155 14.9 -- -- -- --
618.2 1.16 3.44 -- -- 2.2 -- -- 0.129 -- 20.6 851 22 --
710.71 1.24 3.52 -- -- -- -- -- -0.169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 582.57 temperature 20 720 < th dose dependent rect. 22 9
4 583.40 temperature 20 270 < th dose dependent rect. 5 3
12 586.03 temperature 20 270 < th dose independent rect. 5 5
18 586.89 temperature 25 270 < th dose dependent rect. 23 17
31 588.36 temperature 20 270 < th dose independent sin 4 NA
34 588.48 temperature 20 720 < th dose dependent sin 9 NA
36 588.58 temperature 20 720 < th dose dependent rect. 23 4
38 588.62 temperature 20 720 < th dose independent rect. 22 14
64 590.35 temperature 20 270 < th dose independent rect. 5 10
71 590.98 temperature 30 10 < th dose dependent rect. 24 18
81 591.48 temperature 25 270 < th dose dependent sin 5 NA
84 591.57 temperature 20 270 > th dose independent rect. 2 9
127 592.69 temperature 30 10 < th dose dependent sin 4 NA
129 592.71 temperature 20 720 < th dose independent rect. 3 7
152 593.13 humidity 50 14400 < th dose dependent rect. 11 2
231 594.40 temperature 20 720 < th dose independent rect. 1 10
246 594.65 temperature 25 10 < th dose dependent sin 0 NA
302 595.47 temperature 20 270 > th dose independent sin 4 NA
436 596.76 temperature 20 720 > th dose independent rect. 22 14
467 597.08 temperature 10 720 > th dose dependent rect. 23 7
492 597.42 temperature 15 270 > th dose dependent rect. 1 10
515 597.80 humidity 50 14400 < th dose independent rect. 11 2
561 598.43 temperature 15 720 > th dose dependent rect. 22 13
602 598.96 temperature 25 10 < th dose dependent rect. 6 12
619 599.10 temperature 20 10 > th dose dependent sin 4 NA
627 599.14 temperature 25 270 < th dose dependent rect. 5 12
631 599.16 temperature 15 720 > th dose dependent rect. 23 10
647 599.32 temperature 25 10 < th dose dependent rect. 8 10
696 599.89 radiation 20 14400 > th dose independent rect. 6 1
752 600.31 humidity 50 14400 < th dose dependent sin 6 NA
789 600.46 radiation 20 14400 > th dose dependent rect. 6 1
841 600.77 humidity 50 14400 < th dose dependent rect. 11 22
917 601.33 temperature 15 720 > th dose dependent sin 8 NA
958 601.66 humidity 80 4320 > th dose independent rect. 11 2
959 601.66 atmosphere 1015 14400 < th dose independent rect. 12 10
973 601.83 atmosphere 1015 14400 < th dose independent rect. 11 4
997 601.87 atmosphere 1015 14400 > th dose independent rect. 12 10
999 601.88 atmosphere 1015 14400 < th dose independent rect. 17 4